Results 101 - 120 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26818 | 3' | -65.8 | NC_005809.1 | + | 33447 | 0.66 | 0.190546 |
Target: 5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3' miRNA: 3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 33543 | 0.67 | 0.171821 |
Target: 5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAAu -3' miRNA: 3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 33639 | 0.67 | 0.176342 |
Target: 5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAGa -3' miRNA: 3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 34414 | 0.66 | 0.205745 |
Target: 5'- uUCGU--GCGCgGCCGuGCCCucguCGGCGAAg -3' miRNA: 3'- -AGCGgcCGUG-CGGC-CGGGu---GCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 34884 | 0.66 | 0.1945 |
Target: 5'- -aGCCGGC-CGCCGaggucaaGCCCGacgaccuggccccCGGUGAGa -3' miRNA: 3'- agCGGCCGuGCGGC-------CGGGU-------------GCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 34905 | 0.68 | 0.142981 |
Target: 5'- aCGCuCGGCG-GCCGGCUUGCuguuGGCGAc -3' miRNA: 3'- aGCG-GCCGUgCGGCCGGGUG----CCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 35264 | 0.67 | 0.158873 |
Target: 5'- uUCGuCCaGCG-GCgGGCaCCGCGGCGAc -3' miRNA: 3'- -AGC-GGcCGUgCGgCCG-GGUGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 35388 | 0.68 | 0.130979 |
Target: 5'- gCGCgGGCcgauguCGCCGGCCUugugcagcuucucgGCGGUGGu -3' miRNA: 3'- aGCGgCCGu-----GCGGCCGGG--------------UGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 36250 | 0.67 | 0.154756 |
Target: 5'- -gGUCGGC-CGCCGcggcGCCCuCGGUGAu -3' miRNA: 3'- agCGGCCGuGCGGC----CGGGuGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 37058 | 0.66 | 0.180969 |
Target: 5'- -gGCCGGCAUaCUccacgaauuuGGCCCAcuCGGCGGGg -3' miRNA: 3'- agCGGCCGUGcGG----------CCGGGU--GCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 38070 | 0.67 | 0.171821 |
Target: 5'- gUCGCCgaGGCGCuGCuCGGUgCGCcaGGCGAGg -3' miRNA: 3'- -AGCGG--CCGUG-CG-GCCGgGUG--CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 38143 | 0.71 | 0.085675 |
Target: 5'- cCGCCGGaUGCGCgCGGCgCCACaGGCGc- -3' miRNA: 3'- aGCGGCC-GUGCG-GCCG-GGUG-CCGCuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 38246 | 0.68 | 0.13203 |
Target: 5'- gCGCCGuCGCGCCgGGCCUugaGCGuGCGGc -3' miRNA: 3'- aGCGGCcGUGCGG-CCGGG---UGC-CGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 38588 | 0.66 | 0.190546 |
Target: 5'- gCGagCGGCAgGCCagcGGCCCAgGGgGGAu -3' miRNA: 3'- aGCg-GCCGUgCGG---CCGGGUgCCgCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 40552 | 0.68 | 0.125165 |
Target: 5'- -gGCCGGUAUGCCGGUgC-UGGUGGc -3' miRNA: 3'- agCGGCCGUGCGGCCGgGuGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 40610 | 0.67 | 0.176342 |
Target: 5'- gCaCCGGCAUaCCGGCCgccuCGGCGAc -3' miRNA: 3'- aGcGGCCGUGcGGCCGGgu--GCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 40681 | 0.7 | 0.092989 |
Target: 5'- -gGUCGaGCGCG-CGGCCCugGGgGAAg -3' miRNA: 3'- agCGGC-CGUGCgGCCGGGugCCgCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 40691 | 0.67 | 0.171821 |
Target: 5'- uUCGCCcacccGGCcaGCGCCGGCC-ACGGgcUGAAc -3' miRNA: 3'- -AGCGG-----CCG--UGCGGCCGGgUGCC--GCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 41485 | 0.68 | 0.145268 |
Target: 5'- cCGCCGccaacaugaaguacGCGCGCCGGgucgcacaggaaaUCCGCGaGCGAAu -3' miRNA: 3'- aGCGGC--------------CGUGCGGCC-------------GGGUGC-CGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 41584 | 0.7 | 0.103664 |
Target: 5'- gCGCgGGCA-GCgGGCUgACGGUGAAg -3' miRNA: 3'- aGCGgCCGUgCGgCCGGgUGCCGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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