Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26818 | 3' | -65.8 | NC_005809.1 | + | 27247 | 0.66 | 0.205745 |
Target: 5'- -aGCCGGCGCcCCaGGCUCuuGGcCGAGg -3' miRNA: 3'- agCGGCCGUGcGG-CCGGGugCC-GCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 26318 | 0.67 | 0.154756 |
Target: 5'- -gGCCGGCGggUGcCCGuGCCUuCGGCGAc -3' miRNA: 3'- agCGGCCGU--GC-GGC-CGGGuGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 26268 | 0.72 | 0.070683 |
Target: 5'- cCGCCGGcCugGUCGGCUCGCGcaucgcgcGCGAu -3' miRNA: 3'- aGCGGCC-GugCGGCCGGGUGC--------CGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 25978 | 0.66 | 0.180969 |
Target: 5'- uUCcUCGGUuuccuCGCCGGUCUGCGGCGu- -3' miRNA: 3'- -AGcGGCCGu----GCGGCCGGGUGCCGCuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 25733 | 0.67 | 0.174975 |
Target: 5'- cCGCCGGCugaugacguacaugACGCCGGCagaacucgCCGaGGUGGAc -3' miRNA: 3'- aGCGGCCG--------------UGCGGCCG--------GGUgCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 25684 | 0.66 | 0.190546 |
Target: 5'- -aGCCGGCggauuucggcaACGCUGcucauaccaGcCCCGCGGCGGGg -3' miRNA: 3'- agCGGCCG-----------UGCGGC---------C-GGGUGCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 25415 | 0.67 | 0.158873 |
Target: 5'- -gGCCGGcuaugcgaaCugGCCGGCCUGgacaauccCGGCGAc -3' miRNA: 3'- agCGGCC---------GugCGGCCGGGU--------GCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 25148 | 0.67 | 0.176342 |
Target: 5'- gCGCCgGGCGCGCUGcGCUgggUGGCGAu -3' miRNA: 3'- aGCGG-CCGUGCGGC-CGGgu-GCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 24765 | 0.69 | 0.112114 |
Target: 5'- cCGaCUGGCACcgauggacaGCCugggcguggacguGGCCCGCGGCGGg -3' miRNA: 3'- aGC-GGCCGUG---------CGG-------------CCGGGUGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 24696 | 0.72 | 0.063284 |
Target: 5'- cCGCCGGCACGCCauguGGUUCACGuGCc-- -3' miRNA: 3'- aGCGGCCGUGCGG----CCGGGUGC-CGcuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 24519 | 0.67 | 0.15034 |
Target: 5'- gUCGUCGGCGucaauguCGCCGaGgCCGCGcGCGGc -3' miRNA: 3'- -AGCGGCCGU-------GCGGC-CgGGUGC-CGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 24433 | 0.7 | 0.092989 |
Target: 5'- uUUGUCGGUgccGCGCgCGGCCU-CGGCGAc -3' miRNA: 3'- -AGCGGCCG---UGCG-GCCGGGuGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 24140 | 0.69 | 0.106508 |
Target: 5'- -aGCCGGCugcGCGCCuGGCCCagcgccucgACGGCu-- -3' miRNA: 3'- agCGGCCG---UGCGG-CCGGG---------UGCCGcuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 24012 | 0.67 | 0.176342 |
Target: 5'- -gGUgGGCGCGUCGGCCaauuCaGCGAAg -3' miRNA: 3'- agCGgCCGUGCGGCCGGgu--GcCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 23759 | 0.68 | 0.146812 |
Target: 5'- aUGCCGGCGCcaccggGCCGauGCgCCGCGGCu-- -3' miRNA: 3'- aGCGGCCGUG------CGGC--CG-GGUGCCGcuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 23568 | 0.69 | 0.121857 |
Target: 5'- aUCGCCGGCAggUGCgGGCggGgGGCGAc -3' miRNA: 3'- -AGCGGCCGU--GCGgCCGggUgCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 23421 | 0.68 | 0.135232 |
Target: 5'- gCGCCGGUcagugcgACGCCGGCCgGgauGCGGAu -3' miRNA: 3'- aGCGGCCG-------UGCGGCCGGgUgc-CGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 23091 | 0.67 | 0.171821 |
Target: 5'- cUCGCCccgACGCCaacggcggcGCCCACGGCGAc -3' miRNA: 3'- -AGCGGccgUGCGGc--------CGGGUGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 22897 | 0.71 | 0.083361 |
Target: 5'- cUGUCGGC-UGUCGGCagCGCGGCGAAg -3' miRNA: 3'- aGCGGCCGuGCGGCCGg-GUGCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 22863 | 0.66 | 0.200565 |
Target: 5'- -aGuCCGGCACcaugcugaCCGGCCCGCagGGCGu- -3' miRNA: 3'- agC-GGCCGUGc-------GGCCGGGUG--CCGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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