miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26818 3' -65.8 NC_005809.1 + 691 0.78 0.021181
Target:  5'- aCGCCGG-ACGCCGuGUCCACGGCGc- -3'
miRNA:   3'- aGCGGCCgUGCGGC-CGGGUGCCGCuu -5'
26818 3' -65.8 NC_005809.1 + 8178 0.67 0.150736
Target:  5'- aCGCCGGC-CGCgCGGUgCAgGGCc-- -3'
miRNA:   3'- aGCGGCCGuGCG-GCCGgGUgCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 28639 0.66 0.205745
Target:  5'- cUGCCGGUggccgacgugcGCGCCgcgauGGCCgGCGGCc-- -3'
miRNA:   3'- aGCGGCCG-----------UGCGG-----CCGGgUGCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 27757 0.74 0.050526
Target:  5'- cUGCCGGCGCG-CGGCcuguauuccaagaCCACGGUGGAg -3'
miRNA:   3'- aGCGGCCGUGCgGCCG-------------GGUGCCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 24696 0.72 0.063284
Target:  5'- cCGCCGGCACGCCauguGGUUCACGuGCc-- -3'
miRNA:   3'- aGCGGCCGUGCGG----CCGGGUGC-CGcuu -5'
26818 3' -65.8 NC_005809.1 + 38588 0.66 0.190546
Target:  5'- gCGagCGGCAgGCCagcGGCCCAgGGgGGAu -3'
miRNA:   3'- aGCg-GCCGUgCGG---CCGGGUgCCgCUU- -5'
26818 3' -65.8 NC_005809.1 + 25148 0.67 0.176342
Target:  5'- gCGCCgGGCGCGCUGcGCUgggUGGCGAu -3'
miRNA:   3'- aGCGG-CCGUGCGGC-CGGgu-GCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 13078 0.67 0.171821
Target:  5'- gUCGCCacuGCGCuGCgCGGCCUguacgagaACGGCGGg -3'
miRNA:   3'- -AGCGGc--CGUG-CG-GCCGGG--------UGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 11487 0.67 0.163088
Target:  5'- gCGaCCuGCACGCCGGCUCGCcGCu-- -3'
miRNA:   3'- aGC-GGcCGUGCGGCCGGGUGcCGcuu -5'
26818 3' -65.8 NC_005809.1 + 26318 0.67 0.154756
Target:  5'- -gGCCGGCGggUGcCCGuGCCUuCGGCGAc -3'
miRNA:   3'- agCGGCCGU--GC-GGC-CGGGuGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 3949 0.68 0.142981
Target:  5'- uUCGgCGGCGacggcaGCgCGGCCUACaGCGAc -3'
miRNA:   3'- -AGCgGCCGUg-----CG-GCCGGGUGcCGCUu -5'
26818 3' -65.8 NC_005809.1 + 31106 0.68 0.139241
Target:  5'- uUCGC--GCACGuuGGCCCGC-GCGAu -3'
miRNA:   3'- -AGCGgcCGUGCggCCGGGUGcCGCUu -5'
26818 3' -65.8 NC_005809.1 + 35388 0.68 0.130979
Target:  5'- gCGCgGGCcgauguCGCCGGCCUugugcagcuucucgGCGGUGGu -3'
miRNA:   3'- aGCGgCCGu-----GCGGCCGGG--------------UGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 7153 0.69 0.106508
Target:  5'- gCGUgGGCGCGCCGuggguaGgCCGCGGCGu- -3'
miRNA:   3'- aGCGgCCGUGCGGC------CgGGUGCCGCuu -5'
26818 3' -65.8 NC_005809.1 + 28718 0.7 0.092989
Target:  5'- cCGCCGGCACcgauCUGGCaCUGCGcGCGGAa -3'
miRNA:   3'- aGCGGCCGUGc---GGCCG-GGUGC-CGCUU- -5'
26818 3' -65.8 NC_005809.1 + 38143 0.71 0.085675
Target:  5'- cCGCCGGaUGCGCgCGGCgCCACaGGCGc- -3'
miRNA:   3'- aGCGGCC-GUGCG-GCCG-GGUG-CCGCuu -5'
26818 3' -65.8 NC_005809.1 + 32388 0.79 0.016883
Target:  5'- gUUGUCGGgACGCCGGCCUugaugGCGGCGAu -3'
miRNA:   3'- -AGCGGCCgUGCGGCCGGG-----UGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 33351 0.66 0.194999
Target:  5'- cCGCUGGCGaauCCGGCacggccaCCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUgc-GGCCG-------GGUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 41485 0.68 0.145268
Target:  5'- cCGCCGccaacaugaaguacGCGCGCCGGgucgcacaggaaaUCCGCGaGCGAAu -3'
miRNA:   3'- aGCGGC--------------CGUGCGGCC-------------GGGUGC-CGCUU- -5'
26818 3' -65.8 NC_005809.1 + 23759 0.68 0.146812
Target:  5'- aUGCCGGCGCcaccggGCCGauGCgCCGCGGCu-- -3'
miRNA:   3'- aGCGGCCGUG------CGGC--CG-GGUGCCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.