miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26818 3' -65.8 NC_005809.1 + 9329 0.71 0.078911
Target:  5'- aCGUCGGCGCGgCGGgCgGCGGCa-- -3'
miRNA:   3'- aGCGGCCGUGCgGCCgGgUGCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 34884 0.66 0.1945
Target:  5'- -aGCCGGC-CGCCGaggucaaGCCCGacgaccuggccccCGGUGAGa -3'
miRNA:   3'- agCGGCCGuGCGGC-------CGGGU-------------GCCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 21274 0.68 0.142981
Target:  5'- aUGUCGGCGuaagUGUCGGCCCAgCGGuCGGc -3'
miRNA:   3'- aGCGGCCGU----GCGGCCGGGU-GCC-GCUu -5'
26818 3' -65.8 NC_005809.1 + 41485 0.68 0.145268
Target:  5'- cCGCCGccaacaugaaguacGCGCGCCGGgucgcacaggaaaUCCGCGaGCGAAu -3'
miRNA:   3'- aGCGGC--------------CGUGCGGCC-------------GGGUGC-CGCUU- -5'
26818 3' -65.8 NC_005809.1 + 24140 0.69 0.106508
Target:  5'- -aGCCGGCugcGCGCCuGGCCCagcgccucgACGGCu-- -3'
miRNA:   3'- agCGGCCG---UGCGG-CCGGG---------UGCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 1294 0.69 0.109425
Target:  5'- cCGCCcaCAcCGCCGcGCCCAgGGCGAc -3'
miRNA:   3'- aGCGGccGU-GCGGC-CGGGUgCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 28553 0.69 0.118631
Target:  5'- cUUG-CGGC-CGCCGGCCauCGCGGCGc- -3'
miRNA:   3'- -AGCgGCCGuGCGGCCGG--GUGCCGCuu -5'
26818 3' -65.8 NC_005809.1 + 604 0.66 0.184272
Target:  5'- cCGCCuGCGgGUCGGCCagcagcgccguggaCACGGCGu- -3'
miRNA:   3'- aGCGGcCGUgCGGCCGG--------------GUGCCGCuu -5'
26818 3' -65.8 NC_005809.1 + 31025 0.66 0.185703
Target:  5'- cUUGCCGGCcgaggcaaucGCGCgGGCCaACGugcGCGAAg -3'
miRNA:   3'- -AGCGGCCG----------UGCGgCCGGgUGC---CGCUU- -5'
26818 3' -65.8 NC_005809.1 + 18279 0.68 0.139241
Target:  5'- cUUGCCGGCcgucaGCgGGCCgGUGGCGAc -3'
miRNA:   3'- -AGCGGCCGug---CGgCCGGgUGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 6244 0.66 0.190546
Target:  5'- -gGCCuGCACGCCGGUa-ACGGUGc- -3'
miRNA:   3'- agCGGcCGUGCGGCCGggUGCCGCuu -5'
26818 3' -65.8 NC_005809.1 + 11835 0.66 0.190546
Target:  5'- -aGaCCGGcCGCGCCGcgguuGgCCugGGCGAAc -3'
miRNA:   3'- agC-GGCC-GUGCGGC-----CgGGugCCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 25684 0.66 0.190546
Target:  5'- -aGCCGGCggauuucggcaACGCUGcucauaccaGcCCCGCGGCGGGg -3'
miRNA:   3'- agCGGCCG-----------UGCGGC---------C-GGGUGCCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 33303 0.66 0.190546
Target:  5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 33447 0.66 0.190546
Target:  5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 33207 0.66 0.194999
Target:  5'- cCGCUGGCGaauCCGGCacggccaCCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUgc-GGCCG-------GGUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 33351 0.66 0.194999
Target:  5'- cCGCUGGCGaauCCGGCacggccaCCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUgc-GGCCG-------GGUG-CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 7784 0.66 0.200565
Target:  5'- gCGCCGGCGuccacccuuCGCC-GCCCAgcaGGCGc- -3'
miRNA:   3'- aGCGGCCGU---------GCGGcCGGGUg--CCGCuu -5'
26818 3' -65.8 NC_005809.1 + 27247 0.66 0.205745
Target:  5'- -aGCCGGCGCcCCaGGCUCuuGGcCGAGg -3'
miRNA:   3'- agCGGCCGUGcGG-CCGGGugCC-GCUU- -5'
26818 3' -65.8 NC_005809.1 + 6377 0.66 0.186182
Target:  5'- aCGUCGGCAaucaggcgcaggccgGCCGGCCCgguguagucGCGGCc-- -3'
miRNA:   3'- aGCGGCCGUg--------------CGGCCGGG---------UGCCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.