Results 101 - 120 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26818 | 3' | -65.8 | NC_005809.1 | + | 33303 | 0.66 | 0.190546 |
Target: 5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3' miRNA: 3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 33447 | 0.66 | 0.190546 |
Target: 5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3' miRNA: 3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 34884 | 0.66 | 0.1945 |
Target: 5'- -aGCCGGC-CGCCGaggucaaGCCCGacgaccuggccccCGGUGAGa -3' miRNA: 3'- agCGGCCGuGCGGC-------CGGGU-------------GCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 33207 | 0.66 | 0.194999 |
Target: 5'- cCGCUGGCGaauCCGGCacggccaCCGCuGGCGAAu -3' miRNA: 3'- aGCGGCCGUgc-GGCCG-------GGUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 33351 | 0.66 | 0.194999 |
Target: 5'- cCGCUGGCGaauCCGGCacggccaCCGCuGGCGAAu -3' miRNA: 3'- aGCGGCCGUgc-GGCCG-------GGUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 16802 | 0.66 | 0.180969 |
Target: 5'- gUUGCCaGUugGUCGcGCCCA-GGCGGc -3' miRNA: 3'- -AGCGGcCGugCGGC-CGGGUgCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 1706 | 0.66 | 0.180969 |
Target: 5'- uUCGCC-GUggGCCGGCgUGCcGGCGAGg -3' miRNA: 3'- -AGCGGcCGugCGGCCGgGUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 24012 | 0.67 | 0.176342 |
Target: 5'- -gGUgGGCGCGUCGGCCaauuCaGCGAAg -3' miRNA: 3'- agCGgCCGUGCGGCCGGgu--GcCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 18469 | 0.67 | 0.154756 |
Target: 5'- gCGCCGGCgGCGUCGGCcgauucguCCACcGUGAu -3' miRNA: 3'- aGCGGCCG-UGCGGCCG--------GGUGcCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 42401 | 0.67 | 0.154756 |
Target: 5'- aCGCCGGCauucuGCGCgCGGCagCUugGGCa-- -3' miRNA: 3'- aGCGGCCG-----UGCG-GCCG--GGugCCGcuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 12285 | 0.67 | 0.158873 |
Target: 5'- gUUGCUGGCccagcgUGCCGG-CUACGGCGGc -3' miRNA: 3'- -AGCGGCCGu-----GCGGCCgGGUGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 4678 | 0.67 | 0.163088 |
Target: 5'- gCaCCaGCGCGCCGGauagCGCGGCGAGa -3' miRNA: 3'- aGcGGcCGUGCGGCCgg--GUGCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 27701 | 0.67 | 0.163088 |
Target: 5'- -gGCC-GCGCGCCGGCa-GCGGCu-- -3' miRNA: 3'- agCGGcCGUGCGGCCGggUGCCGcuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 22078 | 0.67 | 0.167403 |
Target: 5'- -gGUCGGCGCG-CGGCUCgAUGGCGu- -3' miRNA: 3'- agCGGCCGUGCgGCCGGG-UGCCGCuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 27808 | 0.67 | 0.170485 |
Target: 5'- -aGCCGcagcacguccucgcGCGCGCU-GCCCGCGGUGGc -3' miRNA: 3'- agCGGC--------------CGUGCGGcCGGGUGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 23091 | 0.67 | 0.171821 |
Target: 5'- cUCGCCccgACGCCaacggcggcGCCCACGGCGAc -3' miRNA: 3'- -AGCGGccgUGCGGc--------CGGGUGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 33255 | 0.67 | 0.171821 |
Target: 5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAAu -3' miRNA: 3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 33399 | 0.67 | 0.171821 |
Target: 5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAAu -3' miRNA: 3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 33543 | 0.67 | 0.171821 |
Target: 5'- cCGCUGGCAauuacgGCaCGGCCacCGCuGGCGAAu -3' miRNA: 3'- aGCGGCCGUg-----CG-GCCGG--GUG-CCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 40691 | 0.67 | 0.171821 |
Target: 5'- uUCGCCcacccGGCcaGCGCCGGCC-ACGGgcUGAAc -3' miRNA: 3'- -AGCGG-----CCG--UGCGGCCGGgUGCC--GCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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