Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26818 | 3' | -65.8 | NC_005809.1 | + | 1773 | 1.05 | 0.000135 |
Target: 5'- cUCGCCGGCACGCCGGCCCACGGCGAAu -3' miRNA: 3'- -AGCGGCCGUGCGGCCGGGUGCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 27518 | 0.7 | 0.100892 |
Target: 5'- gCGCUGGCauaccaGCGCCagGGCCUGCGGCc-- -3' miRNA: 3'- aGCGGCCG------UGCGG--CCGGGUGCCGcuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 7153 | 0.69 | 0.106508 |
Target: 5'- gCGUgGGCGCGCCGuggguaGgCCGCGGCGu- -3' miRNA: 3'- aGCGgCCGUGCGGC------CgGGUGCCGCuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 28639 | 0.66 | 0.205745 |
Target: 5'- cUGCCGGUggccgacgugcGCGCCgcgauGGCCgGCGGCc-- -3' miRNA: 3'- aGCGGCCG-----------UGCGG-----CCGGgUGCCGcuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 27757 | 0.74 | 0.050526 |
Target: 5'- cUGCCGGCGCG-CGGCcuguauuccaagaCCACGGUGGAg -3' miRNA: 3'- aGCGGCCGUGCgGCCG-------------GGUGCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 13374 | 0.73 | 0.05357 |
Target: 5'- aCGCCGccuacaACGCCGGCCC-CGGCGc- -3' miRNA: 3'- aGCGGCcg----UGCGGCCGGGuGCCGCuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 24696 | 0.72 | 0.063284 |
Target: 5'- cCGCCGGCACGCCauguGGUUCACGuGCc-- -3' miRNA: 3'- aGCGGCCGUGCGG----CCGGGUGC-CGcuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 9240 | 0.72 | 0.065061 |
Target: 5'- gUCGaCGGCGCcaaguugucgcuGCCGGCCCucaaggaaauguACGGCGAGg -3' miRNA: 3'- -AGCgGCCGUG------------CGGCCGGG------------UGCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 38143 | 0.71 | 0.085675 |
Target: 5'- cCGCCGGaUGCGCgCGGCgCCACaGGCGc- -3' miRNA: 3'- aGCGGCC-GUGCG-GCCG-GGUG-CCGCuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 14905 | 0.7 | 0.098189 |
Target: 5'- gCGCUGGC-CGCCaacGGCaucgaCCugGGCGAAg -3' miRNA: 3'- aGCGGCCGuGCGG---CCG-----GGugCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 40681 | 0.7 | 0.092989 |
Target: 5'- -gGUCGaGCGCG-CGGCCCugGGgGAAg -3' miRNA: 3'- agCGGC-CGUGCgGCCGGGugCCgCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 17378 | 0.71 | 0.085675 |
Target: 5'- -aGCCGGCccauAUGCCGgaauggaugcgcGCCCGCGGCGc- -3' miRNA: 3'- agCGGCCG----UGCGGC------------CGGGUGCCGCuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 32388 | 0.79 | 0.016883 |
Target: 5'- gUUGUCGGgACGCCGGCCUugaugGCGGCGAu -3' miRNA: 3'- -AGCGGCCgUGCGGCCGGG-----UGCCGCUu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 28718 | 0.7 | 0.092989 |
Target: 5'- cCGCCGGCACcgauCUGGCaCUGCGcGCGGAa -3' miRNA: 3'- aGCGGCCGUGc---GGCCG-GGUGC-CGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 691 | 0.78 | 0.021181 |
Target: 5'- aCGCCGG-ACGCCGuGUCCACGGCGc- -3' miRNA: 3'- aGCGGCCgUGCGGC-CGGGUGCCGCuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 22897 | 0.71 | 0.083361 |
Target: 5'- cUGUCGGC-UGUCGGCagCGCGGCGAAg -3' miRNA: 3'- aGCGGCCGuGCGGCCGg-GUGCCGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 12679 | 0.7 | 0.092989 |
Target: 5'- aUGCCGaGCGCGUCGGCgCCAUGcGCa-- -3' miRNA: 3'- aGCGGC-CGUGCGGCCG-GGUGC-CGcuu -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 16129 | 0.7 | 0.100892 |
Target: 5'- gCGCCGcGCGCGgCGGCCaCGUGcGCGAAc -3' miRNA: 3'- aGCGGC-CGUGCgGCCGG-GUGC-CGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 15463 | 0.77 | 0.025819 |
Target: 5'- gUCGuCCGGCAucuuCGCCGGCCCGCacGCGGAc -3' miRNA: 3'- -AGC-GGCCGU----GCGGCCGGGUGc-CGCUU- -5' |
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26818 | 3' | -65.8 | NC_005809.1 | + | 11671 | 0.73 | 0.05417 |
Target: 5'- cCGCUGGCACugcuGCCcggcggccagccggcGGCCCugGGCGGc -3' miRNA: 3'- aGCGGCCGUG----CGG---------------CCGGGugCCGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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