miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26818 3' -65.8 NC_005809.1 + 7652 0.68 0.127529
Target:  5'- aCGCCGGCuccuugccguacacGCGCCGuuCUuugGCGGCGAu -3'
miRNA:   3'- aGCGGCCG--------------UGCGGCcgGG---UGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 7784 0.66 0.200565
Target:  5'- gCGCCGGCGuccacccuuCGCC-GCCCAgcaGGCGc- -3'
miRNA:   3'- aGCGGCCGU---------GCGGcCGGGUg--CCGCuu -5'
26818 3' -65.8 NC_005809.1 + 8178 0.67 0.150736
Target:  5'- aCGCCGGC-CGCgCGGUgCAgGGCc-- -3'
miRNA:   3'- aGCGGCCGuGCG-GCCGgGUgCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 8207 0.66 0.1955
Target:  5'- gCGCaCGGCcucguagucGCGCUGGUCgGCGGCc-- -3'
miRNA:   3'- aGCG-GCCG---------UGCGGCCGGgUGCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 8908 0.68 0.142981
Target:  5'- -gGCCaaCGCGCUGGCCCGCGuuGCGGc -3'
miRNA:   3'- agCGGccGUGCGGCCGGGUGC--CGCUu -5'
26818 3' -65.8 NC_005809.1 + 9067 0.66 0.185703
Target:  5'- cCGCCuGCugGaaGcGCCCccgcGCGGCGAGg -3'
miRNA:   3'- aGCGGcCGugCggC-CGGG----UGCCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 9240 0.72 0.065061
Target:  5'- gUCGaCGGCGCcaaguugucgcuGCCGGCCCucaaggaaauguACGGCGAGg -3'
miRNA:   3'- -AGCgGCCGUG------------CGGCCGGG------------UGCCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 9329 0.71 0.078911
Target:  5'- aCGUCGGCGCGgCGGgCgGCGGCa-- -3'
miRNA:   3'- aGCGGCCGUGCgGCCgGgUGCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 10196 0.76 0.034228
Target:  5'- aCGUCaagcGCACGCCGGCCCGaugguCGGCGGAu -3'
miRNA:   3'- aGCGGc---CGUGCGGCCGGGU-----GCCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 10927 0.68 0.125165
Target:  5'- cCGCCGGUuuGCagGGCCUcgggcaguugcGCGGCGAc -3'
miRNA:   3'- aGCGGCCGugCGg-CCGGG-----------UGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 11005 0.68 0.135592
Target:  5'- gUCGCCGcGCAacUGCCcgaGGCCCugcaaacCGGCGGg -3'
miRNA:   3'- -AGCGGC-CGU--GCGG---CCGGGu------GCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 11277 0.71 0.085675
Target:  5'- gCGCUGGgACGCuCGGCCagguaGGCGGAa -3'
miRNA:   3'- aGCGGCCgUGCG-GCCGGgug--CCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 11487 0.67 0.163088
Target:  5'- gCGaCCuGCACGCCGGCUCGCcGCu-- -3'
miRNA:   3'- aGC-GGcCGUGCGGCCGGGUGcCGcuu -5'
26818 3' -65.8 NC_005809.1 + 11671 0.73 0.05417
Target:  5'- cCGCUGGCACugcuGCCcggcggccagccggcGGCCCugGGCGGc -3'
miRNA:   3'- aGCGGCCGUG----CGG---------------CCGGGugCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 11835 0.66 0.190546
Target:  5'- -aGaCCGGcCGCGCCGcgguuGgCCugGGCGAAc -3'
miRNA:   3'- agC-GGCC-GUGCGGC-----CgGGugCCGCUU- -5'
26818 3' -65.8 NC_005809.1 + 12096 0.66 0.1955
Target:  5'- aCGCUgGGCAagaccuCGCCGGCC-ACGGCc-- -3'
miRNA:   3'- aGCGG-CCGU------GCGGCCGGgUGCCGcuu -5'
26818 3' -65.8 NC_005809.1 + 12285 0.67 0.158873
Target:  5'- gUUGCUGGCccagcgUGCCGG-CUACGGCGGc -3'
miRNA:   3'- -AGCGGCCGu-----GCGGCCgGGUGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 12349 0.67 0.167403
Target:  5'- -aGCCGGCACGCUGGgCCA--GCa-- -3'
miRNA:   3'- agCGGCCGUGCGGCCgGGUgcCGcuu -5'
26818 3' -65.8 NC_005809.1 + 12550 0.7 0.103384
Target:  5'- gCGUCGGUGaauuucuUGCCGGCCUcgcgcugcGCGGCGAu -3'
miRNA:   3'- aGCGGCCGU-------GCGGCCGGG--------UGCCGCUu -5'
26818 3' -65.8 NC_005809.1 + 12679 0.7 0.092989
Target:  5'- aUGCCGaGCGCGUCGGCgCCAUGcGCa-- -3'
miRNA:   3'- aGCGGC-CGUGCGGCCG-GGUGC-CGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.