Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26818 | 5' | -58.6 | NC_005809.1 | + | 6809 | 0.67 | 0.359483 |
Target: 5'- gACCUuuccgcuauugaGCGCGGCGGCccaGCGCaGCGGc -3' miRNA: 3'- -UGGA------------CGCGCCGUCGuagUGCG-CGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 3108 | 0.67 | 0.359483 |
Target: 5'- gACCUGaUGCGGCGuCAUaGCGUGCGGu -3' miRNA: 3'- -UGGAC-GCGCCGUcGUAgUGCGCGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 6714 | 0.67 | 0.350842 |
Target: 5'- gACCUgaGCGCGGacacucCGGCcaaGCGCGCGAAg -3' miRNA: 3'- -UGGA--CGCGCC------GUCGuagUGCGCGUUU- -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 36135 | 0.67 | 0.350842 |
Target: 5'- cGCCUucgcGgGCGGUGGUGUCGCGaGCGAGg -3' miRNA: 3'- -UGGA----CgCGCCGUCGUAGUGCgCGUUU- -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 40872 | 0.67 | 0.350842 |
Target: 5'- gGCCUGCGCcuGGC-GCGUCGgGC-CGAu -3' miRNA: 3'- -UGGACGCG--CCGuCGUAGUgCGcGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 2214 | 0.67 | 0.342349 |
Target: 5'- cCCU-CGUcgGGUAGCAcCACGCGCAGc -3' miRNA: 3'- uGGAcGCG--CCGUCGUaGUGCGCGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 1361 | 0.67 | 0.325813 |
Target: 5'- cGCCcuggGCGCGGCGGUGUgGgCGgGCAu- -3' miRNA: 3'- -UGGa---CGCGCCGUCGUAgU-GCgCGUuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 25768 | 0.67 | 0.325813 |
Target: 5'- -gCUGgGCGGCGGCAaCgauggccgcgauGCGCGCGGc -3' miRNA: 3'- ugGACgCGCCGUCGUaG------------UGCGCGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 15658 | 0.67 | 0.325813 |
Target: 5'- gGCCgaugGCGCGGU-GCAUCcGCaGCGCGu- -3' miRNA: 3'- -UGGa---CGCGCCGuCGUAG-UG-CGCGUuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 10864 | 0.67 | 0.325002 |
Target: 5'- cCCUGCGUGGCuucggucGGCGcgaUGCGCGCGGc -3' miRNA: 3'- uGGACGCGCCG-------UCGUa--GUGCGCGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 26046 | 0.68 | 0.309877 |
Target: 5'- aGCCcGCGCGGCGgGCGcgcucCAUGCGCu-- -3' miRNA: 3'- -UGGaCGCGCCGU-CGUa----GUGCGCGuuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 2369 | 0.68 | 0.302134 |
Target: 5'- gGCCUGCacGUGGCAGaCGccCGCGUGCGu- -3' miRNA: 3'- -UGGACG--CGCCGUC-GUa-GUGCGCGUuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 27862 | 0.68 | 0.302134 |
Target: 5'- gACgUGCuGCGGCuGCGcggCGCGCGCu-- -3' miRNA: 3'- -UGgACG-CGCCGuCGUa--GUGCGCGuuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 27641 | 0.68 | 0.294541 |
Target: 5'- cGCCUGCuGCcGguGCccuUUACGCGCAAc -3' miRNA: 3'- -UGGACG-CGcCguCGu--AGUGCGCGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 454 | 0.68 | 0.287098 |
Target: 5'- -gCUGCGCGGcCAGCuugCGgGCGCu-- -3' miRNA: 3'- ugGACGCGCC-GUCGua-GUgCGCGuuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 27800 | 0.68 | 0.287098 |
Target: 5'- cGCC-GCGCagccGCAGCAcguccUCGCGCGCGc- -3' miRNA: 3'- -UGGaCGCGc---CGUCGU-----AGUGCGCGUuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 30430 | 0.68 | 0.287098 |
Target: 5'- cCCUacaGCaGCGGCGGguUCuCGCGCGAc -3' miRNA: 3'- uGGA---CG-CGCCGUCguAGuGCGCGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 37106 | 0.68 | 0.287098 |
Target: 5'- uCCagGC-CGGCAGCuucuggucaAUCACGCGCAu- -3' miRNA: 3'- uGGa-CGcGCCGUCG---------UAGUGCGCGUuu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 17368 | 0.68 | 0.279804 |
Target: 5'- cGCCUGCGacaGGUAugccuGCAUCGCGC-CGAc -3' miRNA: 3'- -UGGACGCg--CCGU-----CGUAGUGCGcGUUu -5' |
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26818 | 5' | -58.6 | NC_005809.1 | + | 8120 | 0.68 | 0.279804 |
Target: 5'- cACC-GCGCGGcCGGCGUUgguuguggGCGUGCGGGu -3' miRNA: 3'- -UGGaCGCGCC-GUCGUAG--------UGCGCGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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