miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26819 3' -57.7 NC_005809.1 + 31305 0.66 0.562486
Target:  5'- gGCgacCGCGUGGUG--GCCCGGCu-GGa -3'
miRNA:   3'- -CGac-GCGCACCACgaUGGGCUGcuCC- -5'
26819 3' -57.7 NC_005809.1 + 1708 0.66 0.562486
Target:  5'- --cGC-CGUGGgccgGCgugCCGGCGAGGg -3'
miRNA:   3'- cgaCGcGCACCa---CGaugGGCUGCUCC- -5'
26819 3' -57.7 NC_005809.1 + 12064 0.66 0.562485
Target:  5'- aGCUGCGCcaccucGUGCUcaACCuCGACGAc- -3'
miRNA:   3'- -CGACGCGcac---CACGA--UGG-GCUGCUcc -5'
26819 3' -57.7 NC_005809.1 + 4811 0.66 0.551782
Target:  5'- cGCUGCGgGau-UGCUGgCCGGCGAcaGGu -3'
miRNA:   3'- -CGACGCgCaccACGAUgGGCUGCU--CC- -5'
26819 3' -57.7 NC_005809.1 + 31989 0.66 0.551781
Target:  5'- gGCUGCGCGccugGGUaCUACgCC--CGAGGc -3'
miRNA:   3'- -CGACGCGCa---CCAcGAUG-GGcuGCUCC- -5'
26819 3' -57.7 NC_005809.1 + 16828 0.66 0.54114
Target:  5'- aGCaGCGCGcccaGcGUGCUGCCgcCGGUGAGGa -3'
miRNA:   3'- -CGaCGCGCa---C-CACGAUGG--GCUGCUCC- -5'
26819 3' -57.7 NC_005809.1 + 4124 0.66 0.530569
Target:  5'- cGCUGCaGCGU--UGCUuCCCGGCGcauaguGGa -3'
miRNA:   3'- -CGACG-CGCAccACGAuGGGCUGCu-----CC- -5'
26819 3' -57.7 NC_005809.1 + 35482 0.66 0.530568
Target:  5'- -gUGCGCGUGG-GC-GCgCCGugGguAGGc -3'
miRNA:   3'- cgACGCGCACCaCGaUG-GGCugC--UCC- -5'
26819 3' -57.7 NC_005809.1 + 8170 0.66 0.520073
Target:  5'- cCUGCGCGUgcgcccGGaUGCUGCC-GGCGAu- -3'
miRNA:   3'- cGACGCGCA------CC-ACGAUGGgCUGCUcc -5'
26819 3' -57.7 NC_005809.1 + 15099 0.66 0.50966
Target:  5'- cCU-CGCGUGGUGCgUGCgCGGCGcgcuGGc -3'
miRNA:   3'- cGAcGCGCACCACG-AUGgGCUGCu---CC- -5'
26819 3' -57.7 NC_005809.1 + 20052 0.67 0.478973
Target:  5'- cGCUGCGCGUGcucGCUGCggggaUGAUGGcGGg -3'
miRNA:   3'- -CGACGCGCACca-CGAUGg----GCUGCU-CC- -5'
26819 3' -57.7 NC_005809.1 + 20687 0.67 0.477965
Target:  5'- -aUGCGCGcacucuaUGG-GCUGgaCGACGAGGc -3'
miRNA:   3'- cgACGCGC-------ACCaCGAUggGCUGCUCC- -5'
26819 3' -57.7 NC_005809.1 + 32036 0.67 0.459026
Target:  5'- cGUUGCGCGUGGcgGCggaaagcgUGgCCGGCGGu- -3'
miRNA:   3'- -CGACGCGCACCa-CG--------AUgGGCUGCUcc -5'
26819 3' -57.7 NC_005809.1 + 5469 0.67 0.449221
Target:  5'- cGCcGgGCGgcgaGGUGUUG-CCGAUGGGGg -3'
miRNA:   3'- -CGaCgCGCa---CCACGAUgGGCUGCUCC- -5'
26819 3' -57.7 NC_005809.1 + 6622 0.67 0.44922
Target:  5'- aGCggGCGCGUGGcGCUGCgCG-CGGa- -3'
miRNA:   3'- -CGa-CGCGCACCaCGAUGgGCuGCUcc -5'
26819 3' -57.7 NC_005809.1 + 1670 0.68 0.439531
Target:  5'- uUUGCGCGUGaUGCUGCC--GCGcAGGu -3'
miRNA:   3'- cGACGCGCACcACGAUGGgcUGC-UCC- -5'
26819 3' -57.7 NC_005809.1 + 12363 0.68 0.439531
Target:  5'- --aGUGCGUGcgcGUGCUcaaGCCCGGCGGc- -3'
miRNA:   3'- cgaCGCGCAC---CACGA---UGGGCUGCUcc -5'
26819 3' -57.7 NC_005809.1 + 14787 0.68 0.439531
Target:  5'- gGCUGCGCGgcgcgcgcuucgUGuacGUGUccgaGCCgGACGAGGg -3'
miRNA:   3'- -CGACGCGC------------AC---CACGa---UGGgCUGCUCC- -5'
26819 3' -57.7 NC_005809.1 + 16644 0.68 0.411198
Target:  5'- --gGUGCa-GGUGCcGgCCGACGAGGg -3'
miRNA:   3'- cgaCGCGcaCCACGaUgGGCUGCUCC- -5'
26819 3' -57.7 NC_005809.1 + 16117 0.69 0.366584
Target:  5'- gGCUGCaCGUcGGUGgc-CCCGACGuAGGa -3'
miRNA:   3'- -CGACGcGCA-CCACgauGGGCUGC-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.