miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2682 3' -48.9 NC_001491.2 + 3173 0.66 0.998447
Target:  5'- cUCCgcgGCCGCGgagCCG--GAGAaGGGCUCGc -3'
miRNA:   3'- -AGG---UGGCGUa--GGUauUUCU-CUUGAGC- -5'
2682 3' -48.9 NC_001491.2 + 2046 0.66 0.998129
Target:  5'- aUCCucgguggagACCGCGUCCAgcaccaGGAGCUUGc -3'
miRNA:   3'- -AGG---------UGGCGUAGGUauuuc-UCUUGAGC- -5'
2682 3' -48.9 NC_001491.2 + 56699 0.67 0.997758
Target:  5'- gCCACCGCAUCCAaagccaUAGuuGGAAUcauggCGg -3'
miRNA:   3'- aGGUGGCGUAGGU------AUUucUCUUGa----GC- -5'
2682 3' -48.9 NC_001491.2 + 48906 0.67 0.997328
Target:  5'- cUCCGCCGCGUCgCGgcuGGuuaAACUCa -3'
miRNA:   3'- -AGGUGGCGUAG-GUauuUCuc-UUGAGc -5'
2682 3' -48.9 NC_001491.2 + 3064 0.67 0.995607
Target:  5'- cUCCGCCGC-UCUgggaGUGcuGGGGGGACUgGg -3'
miRNA:   3'- -AGGUGGCGuAGG----UAU--UUCUCUUGAgC- -5'
2682 3' -48.9 NC_001491.2 + 33556 0.69 0.989485
Target:  5'- gCCGuCCGCcUUCAgacucAGGGAGCUCGg -3'
miRNA:   3'- aGGU-GGCGuAGGUauu--UCUCUUGAGC- -5'
2682 3' -48.9 NC_001491.2 + 49337 0.69 0.989485
Target:  5'- -gCGCCaaGUCCGgcgcGGGAGGACUCGg -3'
miRNA:   3'- agGUGGcgUAGGUau--UUCUCUUGAGC- -5'
2682 3' -48.9 NC_001491.2 + 10057 0.69 0.988011
Target:  5'- gCUGCCGCGcUCCGU--GGGGGACUUu -3'
miRNA:   3'- aGGUGGCGU-AGGUAuuUCUCUUGAGc -5'
2682 3' -48.9 NC_001491.2 + 35981 0.69 0.987855
Target:  5'- cUCCGCCGCGcucCCAUcaagaucGAGGuGGugUCGg -3'
miRNA:   3'- -AGGUGGCGUa--GGUA-------UUUCuCUugAGC- -5'
2682 3' -48.9 NC_001491.2 + 113170 0.71 0.955642
Target:  5'- aUCCGCUGUcgCCGUAGAGu---CUCGa -3'
miRNA:   3'- -AGGUGGCGuaGGUAUUUCucuuGAGC- -5'
2682 3' -48.9 NC_001491.2 + 35602 0.74 0.866006
Target:  5'- gCCACCGCGcggCCAaccgauGGGGACUCGg -3'
miRNA:   3'- aGGUGGCGUa--GGUauuu--CUCUUGAGC- -5'
2682 3' -48.9 NC_001491.2 + 62668 1.11 0.010703
Target:  5'- cUCCACCGCAUCCAUAAAGAGAACUCGa -3'
miRNA:   3'- -AGGUGGCGUAGGUAUUUCUCUUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.