Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2682 | 5' | -54.2 | NC_001491.2 | + | 41906 | 0.66 | 0.950896 |
Target: 5'- cUCGGUCCgCCCcCCugGGcu-GCUUUa -3' miRNA: 3'- uAGCUAGG-GGGaGGugCCaauUGAGA- -5' |
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2682 | 5' | -54.2 | NC_001491.2 | + | 5407 | 0.67 | 0.909553 |
Target: 5'- uUCGccUUCCCUCCGCGGg--GCUCg -3' miRNA: 3'- uAGCuaGGGGGAGGUGCCaauUGAGa -5' |
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2682 | 5' | -54.2 | NC_001491.2 | + | 52162 | 0.67 | 0.903277 |
Target: 5'- aGUCGAcUUCCUCUCCACacgGGUuUAAUUCUg -3' miRNA: 3'- -UAGCU-AGGGGGAGGUG---CCA-AUUGAGA- -5' |
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2682 | 5' | -54.2 | NC_001491.2 | + | 44557 | 0.69 | 0.833056 |
Target: 5'- cGUCuGGUCCCCCUCCugguCGGcguauaagggaucUGACUCg -3' miRNA: 3'- -UAG-CUAGGGGGAGGu---GCCa------------AUUGAGa -5' |
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2682 | 5' | -54.2 | NC_001491.2 | + | 99300 | 0.69 | 0.819282 |
Target: 5'- uAUCGGUCCCUUUCCcUGGcgacUAACUCg -3' miRNA: 3'- -UAGCUAGGGGGAGGuGCCa---AUUGAGa -5' |
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2682 | 5' | -54.2 | NC_001491.2 | + | 51147 | 0.7 | 0.801435 |
Target: 5'- cUCGAUCCCCgUCC-UGGU--ACUCc -3' miRNA: 3'- uAGCUAGGGGgAGGuGCCAauUGAGa -5' |
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2682 | 5' | -54.2 | NC_001491.2 | + | 62702 | 1.05 | 0.007221 |
Target: 5'- uAUCGAUCCCCCUCCACGGUUAACUCUc -3' miRNA: 3'- -UAGCUAGGGGGAGGUGCCAAUUGAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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