Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 19818 | 0.68 | 0.706173 |
Target: 5'- cCUCGuGGCCGGCAacaacggcaaccAgcccaagcaggGCGAuGCGCGGc -3' miRNA: 3'- -GAGUuUCGGCCGU------------Uaa---------UGCU-CGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 13601 | 0.69 | 0.697177 |
Target: 5'- gUCAGgcGGCCGaCAGUU-CG-GCGCGGa -3' miRNA: 3'- gAGUU--UCGGCcGUUAAuGCuCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 36556 | 0.69 | 0.697177 |
Target: 5'- cCUCGAAGUCGu------CGAGCGCGGc -3' miRNA: 3'- -GAGUUUCGGCcguuaauGCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 38181 | 0.69 | 0.68587 |
Target: 5'- gCUCAAGGcCCGGCGcg-ACG-GCGCc- -3' miRNA: 3'- -GAGUUUC-GGCCGUuaaUGCuCGCGcc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 34188 | 0.69 | 0.68587 |
Target: 5'- -aCGuGGgCGGCGAUUcucgaagauuCGAGCGCGGc -3' miRNA: 3'- gaGUuUCgGCCGUUAAu---------GCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 42397 | 0.69 | 0.674508 |
Target: 5'- -gUAGGGCCGGCGGUaGCGAauccccagGCGCu- -3' miRNA: 3'- gaGUUUCGGCCGUUAaUGCU--------CGCGcc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 33492 | 0.69 | 0.663102 |
Target: 5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3' miRNA: 3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 33636 | 0.69 | 0.663102 |
Target: 5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3' miRNA: 3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 33252 | 0.69 | 0.663102 |
Target: 5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3' miRNA: 3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 33396 | 0.69 | 0.663102 |
Target: 5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3' miRNA: 3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 33612 | 0.69 | 0.663102 |
Target: 5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3' miRNA: 3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 33540 | 0.69 | 0.663102 |
Target: 5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3' miRNA: 3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 33516 | 0.69 | 0.663102 |
Target: 5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3' miRNA: 3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 40881 | 0.69 | 0.663102 |
Target: 5'- gUCAuGGCCGGCc--UGCGccuGGCGCGu -3' miRNA: 3'- gAGUuUCGGCCGuuaAUGC---UCGCGCc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 24800 | 0.69 | 0.651665 |
Target: 5'- gUCGAGGCCGcGCA------GGCGCGGu -3' miRNA: 3'- gAGUUUCGGC-CGUuaaugcUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 7082 | 0.69 | 0.64823 |
Target: 5'- aUCAAcGCCaaguccucguucauGGCGAau-CGGGCGCGGa -3' miRNA: 3'- gAGUUuCGG--------------CCGUUaauGCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 9846 | 0.7 | 0.640209 |
Target: 5'- cCUCGGuuUCGGCGucgAUGAGCGUGGc -3' miRNA: 3'- -GAGUUucGGCCGUuaaUGCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 27549 | 0.7 | 0.637916 |
Target: 5'- -----cGCCGGCAuccucgcguggUGCGuGCGCGGc -3' miRNA: 3'- gaguuuCGGCCGUua---------AUGCuCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 5272 | 0.7 | 0.628744 |
Target: 5'- cCUCGAcgugggcacgguAGCCGGCAAUaucgACGAcGUGCaGGc -3' miRNA: 3'- -GAGUU------------UCGGCCGUUAa---UGCU-CGCG-CC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 10937 | 0.7 | 0.628744 |
Target: 5'- -gCAGGGCCucgGGCAGUUGCGcGGCGacagcCGGg -3' miRNA: 3'- gaGUUUCGG---CCGUUAAUGC-UCGC-----GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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