Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26821 | 3' | -51 | NC_005809.1 | + | 27359 | 0.69 | 0.719595 |
Target: 5'- cGACcUCGCAGCaCUCGuccagccauUCGGCCAGcaaAUCc -3' miRNA: 3'- -CUGuAGCGUUG-GAGU---------AGCUGGUC---UAG- -5' |
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26821 | 3' | -51 | NC_005809.1 | + | 28327 | 0.69 | 0.672773 |
Target: 5'- cGGCGUCGgAcucgauggccuugGCCUCGUCGGgCAGcgCg -3' miRNA: 3'- -CUGUAGCgU-------------UGGAGUAGCUgGUCuaG- -5' |
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26821 | 3' | -51 | NC_005809.1 | + | 29010 | 0.71 | 0.557183 |
Target: 5'- cGACGUagGCGACCaggCGccgcgcuUCGGCCAGGUCg -3' miRNA: 3'- -CUGUAg-CGUUGGa--GU-------AGCUGGUCUAG- -5' |
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26821 | 3' | -51 | NC_005809.1 | + | 29794 | 0.66 | 0.86172 |
Target: 5'- cGGCAuacgcugucUCGCGcucgauGCCgaugaaUCGUCGACCAGAa- -3' miRNA: 3'- -CUGU---------AGCGU------UGG------AGUAGCUGGUCUag -5' |
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26821 | 3' | -51 | NC_005809.1 | + | 30185 | 0.68 | 0.740798 |
Target: 5'- cGGCGUguucuggCGCGGCCUCAUCGcCUGGGa- -3' miRNA: 3'- -CUGUA-------GCGUUGGAGUAGCuGGUCUag -5' |
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26821 | 3' | -51 | NC_005809.1 | + | 32299 | 0.7 | 0.62755 |
Target: 5'- cGCGUugCGCGACCUCAUCGccgccaucaagGCCGGcGUCc -3' miRNA: 3'- cUGUA--GCGUUGGAGUAGC-----------UGGUC-UAG- -5' |
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26821 | 3' | -51 | NC_005809.1 | + | 32677 | 0.72 | 0.491416 |
Target: 5'- cGGCGUCGCGGCC-C-UUGACCGGGc- -3' miRNA: 3'- -CUGUAGCGUUGGaGuAGCUGGUCUag -5' |
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26821 | 3' | -51 | NC_005809.1 | + | 34979 | 0.69 | 0.696901 |
Target: 5'- cGACAUUGCu-UCUCAcCGgggGCCAGGUCg -3' miRNA: 3'- -CUGUAGCGuuGGAGUaGC---UGGUCUAG- -5' |
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26821 | 3' | -51 | NC_005809.1 | + | 35185 | 0.69 | 0.673927 |
Target: 5'- cGGCcuUCGCGcgaaugGCCUUGcaccaggacUCGACCAGAUCg -3' miRNA: 3'- -CUGu-AGCGU------UGGAGU---------AGCUGGUCUAG- -5' |
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26821 | 3' | -51 | NC_005809.1 | + | 36767 | 0.67 | 0.815387 |
Target: 5'- cGCAgagCGCGACguuCUCGUCGAUcaacgcccaccgCAGAUCg -3' miRNA: 3'- cUGUa--GCGUUG---GAGUAGCUG------------GUCUAG- -5' |
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26821 | 3' | -51 | NC_005809.1 | + | 38376 | 0.66 | 0.870224 |
Target: 5'- cGACGugcUCGCGGCCaacaugcccgcCAUCGAggcggccggcuaCCAGAUCg -3' miRNA: 3'- -CUGU---AGCGUUGGa----------GUAGCU------------GGUCUAG- -5' |
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26821 | 3' | -51 | NC_005809.1 | + | 38686 | 0.71 | 0.546959 |
Target: 5'- cGACAUCGagaaauACCUCGUCGAgCGcGUCa -3' miRNA: 3'- -CUGUAGCgu----UGGAGUAGCUgGUcUAG- -5' |
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26821 | 3' | -51 | NC_005809.1 | + | 39854 | 0.67 | 0.815387 |
Target: 5'- cGACGUUGCGcaggugcgcccACUUCGUCGauucgucggGCCAGGUg -3' miRNA: 3'- -CUGUAGCGU-----------UGGAGUAGC---------UGGUCUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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