miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26821 3' -51 NC_005809.1 + 2772 1.11 0.001301
Target:  5'- cGACAUCGCAACCUCAUCGACCAGAUCa -3'
miRNA:   3'- -CUGUAGCGUUGGAGUAGCUGGUCUAG- -5'
26821 3' -51 NC_005809.1 + 18975 0.75 0.352431
Target:  5'- cGCGggCGcCGACCUCAUCGACCuGAUg -3'
miRNA:   3'- cUGUa-GC-GUUGGAGUAGCUGGuCUAg -5'
26821 3' -51 NC_005809.1 + 32677 0.72 0.491416
Target:  5'- cGGCGUCGCGGCC-C-UUGACCGGGc- -3'
miRNA:   3'- -CUGUAGCGUUGGaGuAGCUGGUCUag -5'
26821 3' -51 NC_005809.1 + 38686 0.71 0.546959
Target:  5'- cGACAUCGagaaauACCUCGUCGAgCGcGUCa -3'
miRNA:   3'- -CUGUAGCgu----UGGAGUAGCUgGUcUAG- -5'
26821 3' -51 NC_005809.1 + 1297 0.71 0.54696
Target:  5'- cGACAcCGCuuucgaccGCCUCAUCGGCCAuGAg- -3'
miRNA:   3'- -CUGUaGCGu-------UGGAGUAGCUGGU-CUag -5'
26821 3' -51 NC_005809.1 + 29010 0.71 0.557183
Target:  5'- cGACGUagGCGACCaggCGccgcgcuUCGGCCAGGUCg -3'
miRNA:   3'- -CUGUAg-CGUUGGa--GU-------AGCUGGUCUAG- -5'
26821 3' -51 NC_005809.1 + 17853 0.71 0.581238
Target:  5'- -cCAcCGUGGCCUCGUCGcCCAGGUa -3'
miRNA:   3'- cuGUaGCGUUGGAGUAGCuGGUCUAg -5'
26821 3' -51 NC_005809.1 + 9649 0.7 0.604342
Target:  5'- cGAgGUgCGCAACgUguUCGACCGGAUg -3'
miRNA:   3'- -CUgUA-GCGUUGgAguAGCUGGUCUAg -5'
26821 3' -51 NC_005809.1 + 18887 0.7 0.615938
Target:  5'- cGCAaaauUCGCAGCUUCcugCGccGCCAGAUCa -3'
miRNA:   3'- cUGU----AGCGUUGGAGua-GC--UGGUCUAG- -5'
26821 3' -51 NC_005809.1 + 32299 0.7 0.62755
Target:  5'- cGCGUugCGCGACCUCAUCGccgccaucaagGCCGGcGUCc -3'
miRNA:   3'- cUGUA--GCGUUGGAGUAGC-----------UGGUC-UAG- -5'
26821 3' -51 NC_005809.1 + 28327 0.69 0.672773
Target:  5'- cGGCGUCGgAcucgauggccuugGCCUCGUCGGgCAGcgCg -3'
miRNA:   3'- -CUGUAGCgU-------------UGGAGUAGCUgGUCuaG- -5'
26821 3' -51 NC_005809.1 + 35185 0.69 0.673927
Target:  5'- cGGCcuUCGCGcgaaugGCCUUGcaccaggacUCGACCAGAUCg -3'
miRNA:   3'- -CUGu-AGCGU------UGGAGU---------AGCUGGUCUAG- -5'
26821 3' -51 NC_005809.1 + 5289 0.69 0.673927
Target:  5'- cGGCGUUGuCGGCCacggCGUCGAuauuuuCCAGGUCg -3'
miRNA:   3'- -CUGUAGC-GUUGGa---GUAGCU------GGUCUAG- -5'
26821 3' -51 NC_005809.1 + 16603 0.69 0.685442
Target:  5'- aGCAagGCGGCCUguacggcuaUAUCGGCCAGAc- -3'
miRNA:   3'- cUGUagCGUUGGA---------GUAGCUGGUCUag -5'
26821 3' -51 NC_005809.1 + 18627 0.69 0.696901
Target:  5'- cGCGagCGCGGCCUCcacCGACguGAUCg -3'
miRNA:   3'- cUGUa-GCGUUGGAGua-GCUGguCUAG- -5'
26821 3' -51 NC_005809.1 + 34979 0.69 0.696901
Target:  5'- cGACAUUGCu-UCUCAcCGgggGCCAGGUCg -3'
miRNA:   3'- -CUGUAGCGuuGGAGUaGC---UGGUCUAG- -5'
26821 3' -51 NC_005809.1 + 27359 0.69 0.719595
Target:  5'- cGACcUCGCAGCaCUCGuccagccauUCGGCCAGcaaAUCc -3'
miRNA:   3'- -CUGuAGCGUUG-GAGU---------AGCUGGUC---UAG- -5'
26821 3' -51 NC_005809.1 + 30185 0.68 0.740798
Target:  5'- cGGCGUguucuggCGCGGCCUCAUCGcCUGGGa- -3'
miRNA:   3'- -CUGUA-------GCGUUGGAGUAGCuGGUCUag -5'
26821 3' -51 NC_005809.1 + 8671 0.67 0.782836
Target:  5'- cGGCAUUGCGugccgcgcgcACCUCGgcguugguguacUGGCCGGGUCg -3'
miRNA:   3'- -CUGUAGCGU----------UGGAGUa-----------GCUGGUCUAG- -5'
26821 3' -51 NC_005809.1 + 8348 0.67 0.795275
Target:  5'- ----cCGCGGCCUgGUCGAuagcgugcgUCAGAUCg -3'
miRNA:   3'- cuguaGCGUUGGAgUAGCU---------GGUCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.