miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 37466 0.68 0.419748
Target:  5'- --gGCGCcaGCCGcaccggACGCUGGgcCGGCCGCc -3'
miRNA:   3'- uuaUGUGc-CGGU------UGUGACC--GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 31520 0.68 0.419748
Target:  5'- -cUGCugGGCCu-CGCUGuGuuGCCGUg -3'
miRNA:   3'- uuAUGugCCGGuuGUGAC-CgcCGGCG- -5'
26822 3' -57 NC_005809.1 + 2591 0.68 0.373345
Target:  5'- -uUGCAaGGCCAGCAggUUGGCgaGGUCGUa -3'
miRNA:   3'- uuAUGUgCCGGUUGU--GACCG--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 25755 0.68 0.373345
Target:  5'- --cGCugGGC--GCGCUgcugGGCGGCgGCa -3'
miRNA:   3'- uuaUGugCCGguUGUGA----CCGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 41173 0.68 0.379629
Target:  5'- --gGgGCGGCCAugAgUGaaaccguugugcgcGUGGCCGCg -3'
miRNA:   3'- uuaUgUGCCGGUugUgAC--------------CGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 36408 0.68 0.382344
Target:  5'- --gAC-CGGCCuGCGCUGGgaagaugaCGGCgGCg -3'
miRNA:   3'- uuaUGuGCCGGuUGUGACC--------GCCGgCG- -5'
26822 3' -57 NC_005809.1 + 41673 0.68 0.390565
Target:  5'- --aGCGCGGUCAACuuCUGgaacaacGCGGCgGCc -3'
miRNA:   3'- uuaUGUGCCGGUUGu-GAC-------CGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 39301 0.68 0.395181
Target:  5'- --gGCACgGGCCGACuauCUGGCGcggaagcugaaucccGCCGg -3'
miRNA:   3'- uuaUGUG-CCGGUUGu--GACCGC---------------CGGCg -5'
26822 3' -57 NC_005809.1 + 5565 0.68 0.419748
Target:  5'- cGGUAUcgACGgcGCCAACGCUGGCcGCCa- -3'
miRNA:   3'- -UUAUG--UGC--CGGUUGUGACCGcCGGcg -5'
26822 3' -57 NC_005809.1 + 20722 0.68 0.413043
Target:  5'- --gGCACcccaucaGGCCGACaugcuGCUGGCGccguagaggcgcugcGCCGCg -3'
miRNA:   3'- uuaUGUG-------CCGGUUG-----UGACCGC---------------CGGCG- -5'
26822 3' -57 NC_005809.1 + 14849 0.68 0.419748
Target:  5'- cGUugGCGGCCAGCGCcgcacGCuGGgCGCc -3'
miRNA:   3'- uUAugUGCCGGUUGUGac---CG-CCgGCG- -5'
26822 3' -57 NC_005809.1 + 26257 0.69 0.354922
Target:  5'- --gGCACGggcacccGCCGGC-CUGGuCGGCuCGCg -3'
miRNA:   3'- uuaUGUGC-------CGGUUGuGACC-GCCG-GCG- -5'
26822 3' -57 NC_005809.1 + 8885 0.69 0.355784
Target:  5'- --gGCGCGGgCAucauugugaaugGCGCUaucGGCGGCgCGCu -3'
miRNA:   3'- uuaUGUGCCgGU------------UGUGA---CCGCCG-GCG- -5'
26822 3' -57 NC_005809.1 + 4258 0.69 0.355784
Target:  5'- cGGUGC-CGGCCGucaGCGCcGGCauggugauGGCCGUg -3'
miRNA:   3'- -UUAUGuGCCGGU---UGUGaCCG--------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 24103 0.69 0.355784
Target:  5'- --gACGaauCGGCCGACGCcgccGGCG-CCGCg -3'
miRNA:   3'- uuaUGU---GCCGGUUGUGa---CCGCcGGCG- -5'
26822 3' -57 NC_005809.1 + 30565 0.69 0.33055
Target:  5'- ---cCACGGCC-GCGCUGcUGGCCGa -3'
miRNA:   3'- uuauGUGCCGGuUGUGACcGCCGGCg -5'
26822 3' -57 NC_005809.1 + 28542 0.69 0.347225
Target:  5'- ----aACGGCaCGAC-CUuGCGGCCGCc -3'
miRNA:   3'- uuaugUGCCG-GUUGuGAcCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 13089 0.69 0.347224
Target:  5'- --gACACGaCCGACGC-GGaacuGGCCGCg -3'
miRNA:   3'- uuaUGUGCcGGUUGUGaCCg---CCGGCG- -5'
26822 3' -57 NC_005809.1 + 12563 0.69 0.338813
Target:  5'- --gGCGCGGCCGugcaguuggaGCACgaUGGCccguucgacGGCUGCa -3'
miRNA:   3'- uuaUGUGCCGGU----------UGUG--ACCG---------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 19250 0.69 0.328101
Target:  5'- -uUGCGCGGCUAcCACgucaucccggccagUGcCGGCCGCa -3'
miRNA:   3'- uuAUGUGCCGGUuGUG--------------ACcGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.