miRNA display CGI


Results 81 - 100 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 32536 0.69 0.347225
Target:  5'- uGAUGC-CGGCCAGgaugcugcCGCcGGCGauGCCGCu -3'
miRNA:   3'- -UUAUGuGCCGGUU--------GUGaCCGC--CGGCG- -5'
26822 3' -57 NC_005809.1 + 28542 0.69 0.347225
Target:  5'- ----aACGGCaCGAC-CUuGCGGCCGCc -3'
miRNA:   3'- uuaugUGCCG-GUUGuGAcCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 8885 0.69 0.355784
Target:  5'- --gGCGCGGgCAucauugugaaugGCGCUaucGGCGGCgCGCu -3'
miRNA:   3'- uuaUGUGCCgGU------------UGUGA---CCGCCG-GCG- -5'
26822 3' -57 NC_005809.1 + 39736 0.69 0.330551
Target:  5'- uGGUGCugGcGCCGcuGCGC--GUGGCCGCg -3'
miRNA:   3'- -UUAUGugC-CGGU--UGUGacCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 4258 0.69 0.355784
Target:  5'- cGGUGC-CGGCCGucaGCGCcGGCauggugauGGCCGUg -3'
miRNA:   3'- -UUAUGuGCCGGU---UGUGaCCG--------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 10205 0.69 0.347224
Target:  5'- -cUGgGCGGCCGGgGCcucGGCGGCgacCGCa -3'
miRNA:   3'- uuAUgUGCCGGUUgUGa--CCGCCG---GCG- -5'
26822 3' -57 NC_005809.1 + 26257 0.69 0.354922
Target:  5'- --gGCACGggcacccGCCGGC-CUGGuCGGCuCGCg -3'
miRNA:   3'- uuaUGUGC-------CGGUUGuGACC-GCCG-GCG- -5'
26822 3' -57 NC_005809.1 + 32585 0.69 0.338813
Target:  5'- --gACACcGCCGACgcugugaccaaGCUGGCccgcgucaagGGCCGCg -3'
miRNA:   3'- uuaUGUGcCGGUUG-----------UGACCG----------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 15836 0.69 0.338813
Target:  5'- --cGCAgCGGgC-GCGCUGGCGGUgGCc -3'
miRNA:   3'- uuaUGU-GCCgGuUGUGACCGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 2016 0.7 0.322437
Target:  5'- uGGUACGCcaCCAGCACcGGCauaccGGCCGCc -3'
miRNA:   3'- -UUAUGUGccGGUUGUGaCCG-----CCGGCG- -5'
26822 3' -57 NC_005809.1 + 2570 0.7 0.29148
Target:  5'- --gACACGGcCCAGCGCgUGcGCGcgcuuGCCGCc -3'
miRNA:   3'- uuaUGUGCC-GGUUGUG-AC-CGC-----CGGCG- -5'
26822 3' -57 NC_005809.1 + 23521 0.7 0.29148
Target:  5'- --gACACGcugaUCGACGCcgccGGCGGCCGCu -3'
miRNA:   3'- uuaUGUGCc---GGUUGUGa---CCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 31588 0.7 0.298995
Target:  5'- cAUGCAaucCGGCCuggccgaACaGGUGGCCGCa -3'
miRNA:   3'- uUAUGU---GCCGGuug----UGaCCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 30986 0.7 0.322437
Target:  5'- ----gGCGGCCAGC-C-GGCGGCCcuggGCg -3'
miRNA:   3'- uuaugUGCCGGUUGuGaCCGCCGG----CG- -5'
26822 3' -57 NC_005809.1 + 22232 0.7 0.322437
Target:  5'- --gACGCGGCC----CUGGUugucGGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGuuguGACCG----CCGGCG- -5'
26822 3' -57 NC_005809.1 + 35896 0.7 0.314473
Target:  5'- --aACACGGCCcugAACAUcGGCGuGgCGCa -3'
miRNA:   3'- uuaUGUGCCGG---UUGUGaCCGC-CgGCG- -5'
26822 3' -57 NC_005809.1 + 2388 0.7 0.298995
Target:  5'- --cGCACGGCa-----UGGCGGUCGCu -3'
miRNA:   3'- uuaUGUGCCGguugugACCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 32094 0.7 0.322437
Target:  5'- --aACACGGCCGcguugcucaacGCcCUGGCcGCUGCc -3'
miRNA:   3'- uuaUGUGCCGGU-----------UGuGACCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 31401 0.7 0.325664
Target:  5'- ---cCACGGCCGACcagcgcacgcaacguGCgcaGGCGGCCcaGCa -3'
miRNA:   3'- uuauGUGCCGGUUG---------------UGa--CCGCCGG--CG- -5'
26822 3' -57 NC_005809.1 + 33787 0.7 0.322437
Target:  5'- --gGCGCGGCCGACcCaucGUGcGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGuGac-CGC-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.