miRNA display CGI


Results 121 - 140 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 15111 0.72 0.223748
Target:  5'- cGUGCGCGGC--GCGCUGGCauaccagcgccagGGCCuGCg -3'
miRNA:   3'- uUAUGUGCCGguUGUGACCG-------------CCGG-CG- -5'
26822 3' -57 NC_005809.1 + 12007 0.72 0.206937
Target:  5'- --cACGuCGGCCAGCAgc-GCGGCCGUg -3'
miRNA:   3'- uuaUGU-GCCGGUUGUgacCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 30431 0.72 0.224348
Target:  5'- -cUACGCGGaagcgCAGCGCgUGGCGcGUCGCg -3'
miRNA:   3'- uuAUGUGCCg----GUUGUG-ACCGC-CGGCG- -5'
26822 3' -57 NC_005809.1 + 21748 0.73 0.201398
Target:  5'- --gGCGCGGCCGcguccACAUaGGacaGGCCGCc -3'
miRNA:   3'- uuaUGUGCCGGU-----UGUGaCCg--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 1463 0.74 0.166137
Target:  5'- --gGCGCGGUCGGCGgccucCUGGCaGGCCGg -3'
miRNA:   3'- uuaUGUGCCGGUUGU-----GACCG-CCGGCg -5'
26822 3' -57 NC_005809.1 + 14741 0.74 0.152793
Target:  5'- --gGCGCGGCCGGCGCcaccgcgGGCaGCgCGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGUGa------CCGcCG-GCG- -5'
26822 3' -57 NC_005809.1 + 21175 0.74 0.152793
Target:  5'- --aGCGCGGCCu--GCUGcGCGGCCuGCu -3'
miRNA:   3'- uuaUGUGCCGGuugUGAC-CGCCGG-CG- -5'
26822 3' -57 NC_005809.1 + 8783 0.74 0.161576
Target:  5'- --cACGCGGC--GCACgaugGGuCGGCCGCg -3'
miRNA:   3'- uuaUGUGCCGguUGUGa---CC-GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 33485 0.75 0.136516
Target:  5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5'
26822 3' -57 NC_005809.1 + 455 0.75 0.128988
Target:  5'- -cUGCGCGGCCAGCuuGCgGGCGcuGUCGCg -3'
miRNA:   3'- uuAUGUGCCGGUUG--UGaCCGC--CGGCG- -5'
26822 3' -57 NC_005809.1 + 33245 0.75 0.136516
Target:  5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5'
26822 3' -57 NC_005809.1 + 11168 0.75 0.144445
Target:  5'- --cGCACGuuGCguGCGCUGGuCGGCCGUg -3'
miRNA:   3'- uuaUGUGC--CGguUGUGACC-GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 33389 0.75 0.136516
Target:  5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5'
26822 3' -57 NC_005809.1 + 888 0.75 0.140429
Target:  5'- --aGCAgGGCCAGCAUggUGGgguucauccCGGCCGCg -3'
miRNA:   3'- uuaUGUgCCGGUUGUG--ACC---------GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 1965 0.75 0.139638
Target:  5'- --cGCGCGGCCcugggggaaggcACGCUGuaGGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGu-----------UGUGACcgCCGGCG- -5'
26822 3' -57 NC_005809.1 + 33533 0.75 0.136516
Target:  5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5'
26822 3' -57 NC_005809.1 + 37957 0.75 0.148566
Target:  5'- --aGCGCgGGCCAACAUUGGCcuGGCUGa -3'
miRNA:   3'- uuaUGUG-CCGGUUGUGACCG--CCGGCg -5'
26822 3' -57 NC_005809.1 + 4634 0.75 0.148566
Target:  5'- gGAUGCugGGCC-ACGCUGcGuCGGCCa- -3'
miRNA:   3'- -UUAUGugCCGGuUGUGAC-C-GCCGGcg -5'
26822 3' -57 NC_005809.1 + 8663 0.76 0.12537
Target:  5'- --cGCGCGGUCGGCAUU-GCGuGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGUGAcCGC-CGGCG- -5'
26822 3' -57 NC_005809.1 + 33365 0.76 0.12537
Target:  5'- --gGCACGGCCAcCGCUGGCGaauCCGg -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGCc--GGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.