miRNA display CGI


Results 101 - 120 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 14849 0.68 0.419748
Target:  5'- cGUugGCGGCCAGCGCcgcacGCuGGgCGCc -3'
miRNA:   3'- uUAugUGCCGGUUGUGac---CG-CCgGCG- -5'
26822 3' -57 NC_005809.1 + 5565 0.68 0.419748
Target:  5'- cGGUAUcgACGgcGCCAACGCUGGCcGCCa- -3'
miRNA:   3'- -UUAUG--UGC--CGGUUGUGACCGcCGGcg -5'
26822 3' -57 NC_005809.1 + 37466 0.68 0.419748
Target:  5'- --gGCGCcaGCCGcaccggACGCUGGgcCGGCCGCc -3'
miRNA:   3'- uuaUGUGc-CGGU------UGUGACC--GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 20722 0.68 0.413043
Target:  5'- --gGCACcccaucaGGCCGACaugcuGCUGGCGccguagaggcgcugcGCCGCg -3'
miRNA:   3'- uuaUGUG-------CCGGUUG-----UGACCGC---------------CGGCG- -5'
26822 3' -57 NC_005809.1 + 213 0.68 0.397968
Target:  5'- --gACACGGCgaacuggcgcaccuCGGCAUUGGCGcGCUGg -3'
miRNA:   3'- uuaUGUGCCG--------------GUUGUGACCGC-CGGCg -5'
26822 3' -57 NC_005809.1 + 39301 0.68 0.395181
Target:  5'- --gGCACgGGCCGACuauCUGGCGcggaagcugaaucccGCCGg -3'
miRNA:   3'- uuaUGUG-CCGGUUGu--GACCGC---------------CGGCg -5'
26822 3' -57 NC_005809.1 + 14576 0.67 0.479783
Target:  5'- -cUAC-CgGGCUGAUGCcGGCGGCCGa -3'
miRNA:   3'- uuAUGuG-CCGGUUGUGaCCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 9661 0.67 0.479783
Target:  5'- --cGCGCGGaac-CGCUGGaaaaGGCCGUg -3'
miRNA:   3'- uuaUGUGCCgguuGUGACCg---CCGGCG- -5'
26822 3' -57 NC_005809.1 + 24560 0.67 0.469477
Target:  5'- --aGCGCGGCgAugGCgaGGCcGGCCa- -3'
miRNA:   3'- uuaUGUGCCGgUugUGa-CCG-CCGGcg -5'
26822 3' -57 NC_005809.1 + 26321 0.67 0.479783
Target:  5'- --gGCACGGUCuuGACgcgcaccgcgaACUGGCcGcGCCGCu -3'
miRNA:   3'- uuaUGUGCCGG--UUG-----------UGACCG-C-CGGCG- -5'
26822 3' -57 NC_005809.1 + 37932 0.67 0.429441
Target:  5'- --cGCgAUGGCCGACGCaGcGUGGCCcaGCa -3'
miRNA:   3'- uuaUG-UGCCGGUUGUGaC-CGCCGG--CG- -5'
26822 3' -57 NC_005809.1 + 10714 0.67 0.42944
Target:  5'- -uUGCACGGCgAg----GGCGuGCCGCa -3'
miRNA:   3'- uuAUGUGCCGgUugugaCCGC-CGGCG- -5'
26822 3' -57 NC_005809.1 + 14904 0.67 0.439263
Target:  5'- -cUGCGCGGCgAucuGCuGCUGGCcGGCCu- -3'
miRNA:   3'- uuAUGUGCCGgU---UG-UGACCG-CCGGcg -5'
26822 3' -57 NC_005809.1 + 40697 0.67 0.439263
Target:  5'- --cACcCGGCCAGCGCcGGCcacgGGCUGa -3'
miRNA:   3'- uuaUGuGCCGGUUGUGaCCG----CCGGCg -5'
26822 3' -57 NC_005809.1 + 3863 0.67 0.449213
Target:  5'- uGUAcCAgGcGCCGuCGCUGuaGGCCGCg -3'
miRNA:   3'- uUAU-GUgC-CGGUuGUGACcgCCGGCG- -5'
26822 3' -57 NC_005809.1 + 7667 0.67 0.449213
Target:  5'- cGUACACGcGCCGuucuUUGGCGGCgaucUGCg -3'
miRNA:   3'- uUAUGUGC-CGGUugu-GACCGCCG----GCG- -5'
26822 3' -57 NC_005809.1 + 6716 0.67 0.449213
Target:  5'- --aACACGGUgAaaagccgcuGCGCUgGGCcGCCGCg -3'
miRNA:   3'- uuaUGUGCCGgU---------UGUGA-CCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 12565 0.67 0.459286
Target:  5'- -uUGC-CGGCCucGCGCUGcGCGGCg-- -3'
miRNA:   3'- uuAUGuGCCGGu-UGUGAC-CGCCGgcg -5'
26822 3' -57 NC_005809.1 + 8168 0.67 0.449212
Target:  5'- --gAUGCGGCCcaggaaGGCGCUGGCGuCCuGCc -3'
miRNA:   3'- uuaUGUGCCGG------UUGUGACCGCcGG-CG- -5'
26822 3' -57 NC_005809.1 + 14369 0.67 0.439263
Target:  5'- --gGCGUGGCCGAC-CUGGacaagGcGCCGCa -3'
miRNA:   3'- uuaUGUGCCGGUUGuGACCg----C-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.