Results 81 - 100 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26822 | 3' | -57 | NC_005809.1 | + | 28542 | 0.69 | 0.347225 |
Target: 5'- ----aACGGCaCGAC-CUuGCGGCCGCc -3' miRNA: 3'- uuaugUGCCG-GUUGuGAcCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 26257 | 0.69 | 0.354922 |
Target: 5'- --gGCACGggcacccGCCGGC-CUGGuCGGCuCGCg -3' miRNA: 3'- uuaUGUGC-------CGGUUGuGACC-GCCG-GCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 8885 | 0.69 | 0.355784 |
Target: 5'- --gGCGCGGgCAucauugugaaugGCGCUaucGGCGGCgCGCu -3' miRNA: 3'- uuaUGUGCCgGU------------UGUGA---CCGCCG-GCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 4258 | 0.69 | 0.355784 |
Target: 5'- cGGUGC-CGGCCGucaGCGCcGGCauggugauGGCCGUg -3' miRNA: 3'- -UUAUGuGCCGGU---UGUGaCCG--------CCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 24103 | 0.69 | 0.355784 |
Target: 5'- --gACGaauCGGCCGACGCcgccGGCG-CCGCg -3' miRNA: 3'- uuaUGU---GCCGGUUGUGa---CCGCcGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 10468 | 0.69 | 0.355784 |
Target: 5'- --gGCAgCGGCCAGgGCguugagcaacGCGGCCGUg -3' miRNA: 3'- uuaUGU-GCCGGUUgUGac--------CGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 20340 | 0.69 | 0.364491 |
Target: 5'- ---uCGCGGCCGACAaccagGGCCGCg -3' miRNA: 3'- uuauGUGCCGGUUGUgaccgCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 2591 | 0.68 | 0.373345 |
Target: 5'- -uUGCAaGGCCAGCAggUUGGCgaGGUCGUa -3' miRNA: 3'- uuAUGUgCCGGUUGU--GACCG--CCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 25755 | 0.68 | 0.373345 |
Target: 5'- --cGCugGGC--GCGCUgcugGGCGGCgGCa -3' miRNA: 3'- uuaUGugCCGguUGUGA----CCGCCGgCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 41173 | 0.68 | 0.379629 |
Target: 5'- --gGgGCGGCCAugAgUGaaaccguugugcgcGUGGCCGCg -3' miRNA: 3'- uuaUgUGCCGGUugUgAC--------------CGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33176 | 0.68 | 0.381437 |
Target: 5'- ---cCGCGGCCugcgcgacaugcaGugGCUGcacaaugcacGCGGCCGCa -3' miRNA: 3'- uuauGUGCCGG-------------UugUGAC----------CGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 41972 | 0.68 | 0.382343 |
Target: 5'- -cUGC-UGGCCGACccGCaGGCGGCCa- -3' miRNA: 3'- uuAUGuGCCGGUUG--UGaCCGCCGGcg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 36408 | 0.68 | 0.382344 |
Target: 5'- --gAC-CGGCCuGCGCUGGgaagaugaCGGCgGCg -3' miRNA: 3'- uuaUGuGCCGGuUGUGACC--------GCCGgCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 41673 | 0.68 | 0.390565 |
Target: 5'- --aGCGCGGUCAACuuCUGgaacaacGCGGCgGCc -3' miRNA: 3'- uuaUGUGCCGGUUGu-GAC-------CGCCGgCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 5096 | 0.68 | 0.395181 |
Target: 5'- --cAgGCGGCCGGCccagcguccggugcgGCUGGC-GCCGUu -3' miRNA: 3'- uuaUgUGCCGGUUG---------------UGACCGcCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 39301 | 0.68 | 0.395181 |
Target: 5'- --gGCACgGGCCGACuauCUGGCGcggaagcugaaucccGCCGg -3' miRNA: 3'- uuaUGUG-CCGGUUGu--GACCGC---------------CGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33013 | 0.68 | 0.397038 |
Target: 5'- gGAUGCuc-GCCAccggcgagcagaucGCACUGGCcgaacagGGCCGCa -3' miRNA: 3'- -UUAUGugcCGGU--------------UGUGACCG-------CCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 213 | 0.68 | 0.397968 |
Target: 5'- --gACACGGCgaacuggcgcaccuCGGCAUUGGCGcGCUGg -3' miRNA: 3'- uuaUGUGCCG--------------GUUGUGACCGC-CGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 22640 | 0.68 | 0.400768 |
Target: 5'- ---cCACGGCCGACAaggaguucGGCGGCgacaaGCu -3' miRNA: 3'- uuauGUGCCGGUUGUga------CCGCCGg----CG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 6353 | 0.68 | 0.41019 |
Target: 5'- --cGCcCGGCCcgaaggccggGGCGCUGGguuacaccagguCGGCCGCc -3' miRNA: 3'- uuaUGuGCCGG----------UUGUGACC------------GCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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