Results 81 - 100 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26822 | 3' | -57 | NC_005809.1 | + | 13089 | 0.69 | 0.347224 |
Target: 5'- --gACACGaCCGACGC-GGaacuGGCCGCg -3' miRNA: 3'- uuaUGUGCcGGUUGUGaCCg---CCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 10205 | 0.69 | 0.347224 |
Target: 5'- -cUGgGCGGCCGGgGCcucGGCGGCgacCGCa -3' miRNA: 3'- uuAUgUGCCGGUUgUGa--CCGCCG---GCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 18148 | 0.69 | 0.338813 |
Target: 5'- --cGCGCGGCacCGACAaaucgGGcCGGCUGCg -3' miRNA: 3'- uuaUGUGCCG--GUUGUga---CC-GCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 12563 | 0.69 | 0.338813 |
Target: 5'- --gGCGCGGCCGugcaguuggaGCACgaUGGCccguucgacGGCUGCa -3' miRNA: 3'- uuaUGUGCCGGU----------UGUG--ACCG---------CCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 32585 | 0.69 | 0.338813 |
Target: 5'- --gACACcGCCGACgcugugaccaaGCUGGCccgcgucaagGGCCGCg -3' miRNA: 3'- uuaUGUGcCGGUUG-----------UGACCG----------CCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 15836 | 0.69 | 0.338813 |
Target: 5'- --cGCAgCGGgC-GCGCUGGCGGUgGCc -3' miRNA: 3'- uuaUGU-GCCgGuUGUGACCGCCGgCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 39736 | 0.69 | 0.330551 |
Target: 5'- uGGUGCugGcGCCGcuGCGC--GUGGCCGCg -3' miRNA: 3'- -UUAUGugC-CGGU--UGUGacCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 30565 | 0.69 | 0.33055 |
Target: 5'- ---cCACGGCC-GCGCUGcUGGCCGa -3' miRNA: 3'- uuauGUGCCGGuUGUGACcGCCGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 19250 | 0.69 | 0.328101 |
Target: 5'- -uUGCGCGGCUAcCACgucaucccggccagUGcCGGCCGCa -3' miRNA: 3'- uuAUGUGCCGGUuGUG--------------ACcGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 31401 | 0.7 | 0.325664 |
Target: 5'- ---cCACGGCCGACcagcgcacgcaacguGCgcaGGCGGCCcaGCa -3' miRNA: 3'- uuauGUGCCGGUUG---------------UGa--CCGCCGG--CG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 30986 | 0.7 | 0.322437 |
Target: 5'- ----gGCGGCCAGC-C-GGCGGCCcuggGCg -3' miRNA: 3'- uuaugUGCCGGUUGuGaCCGCCGG----CG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33787 | 0.7 | 0.322437 |
Target: 5'- --gGCGCGGCCGACcCaucGUGcGCCGCg -3' miRNA: 3'- uuaUGUGCCGGUUGuGac-CGC-CGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 22232 | 0.7 | 0.322437 |
Target: 5'- --gACGCGGCC----CUGGUugucGGCCGCg -3' miRNA: 3'- uuaUGUGCCGGuuguGACCG----CCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 32094 | 0.7 | 0.322437 |
Target: 5'- --aACACGGCCGcguugcucaacGCcCUGGCcGCUGCc -3' miRNA: 3'- uuaUGUGCCGGU-----------UGuGACCGcCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 2016 | 0.7 | 0.322437 |
Target: 5'- uGGUACGCcaCCAGCACcGGCauaccGGCCGCc -3' miRNA: 3'- -UUAUGUGccGGUUGUGaCCG-----CCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 35896 | 0.7 | 0.314473 |
Target: 5'- --aACACGGCCcugAACAUcGGCGuGgCGCa -3' miRNA: 3'- uuaUGUGCCGG---UUGUGaCCGC-CgGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 41242 | 0.7 | 0.312113 |
Target: 5'- ---cCACGGCUuccucgcgcuugucGGC-CUGGUGGCCGUc -3' miRNA: 3'- uuauGUGCCGG--------------UUGuGACCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33606 | 0.7 | 0.30666 |
Target: 5'- ---nCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3' miRNA: 3'- uuauGUGCCGGUuGUGACCG-----------CCGGcg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 2388 | 0.7 | 0.298995 |
Target: 5'- --cGCACGGCa-----UGGCGGUCGCu -3' miRNA: 3'- uuaUGUGCCGguugugACCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 31588 | 0.7 | 0.298995 |
Target: 5'- cAUGCAaucCGGCCuggccgaACaGGUGGCCGCa -3' miRNA: 3'- uUAUGU---GCCGGuug----UGaCCGCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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