miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 14689 0.66 0.499661
Target:  5'- cGUGCugGGCgAGCACgccaagaUGGCGaG-CGCg -3'
miRNA:   3'- uUAUGugCCGgUUGUG-------ACCGC-CgGCG- -5'
26822 3' -57 NC_005809.1 + 14741 0.74 0.152793
Target:  5'- --gGCGCGGCCGGCGCcaccgcgGGCaGCgCGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGUGa------CCGcCG-GCG- -5'
26822 3' -57 NC_005809.1 + 14849 0.68 0.419748
Target:  5'- cGUugGCGGCCAGCGCcgcacGCuGGgCGCc -3'
miRNA:   3'- uUAugUGCCGGUUGUGac---CG-CCgGCG- -5'
26822 3' -57 NC_005809.1 + 14904 0.67 0.439263
Target:  5'- -cUGCGCGGCgAucuGCuGCUGGCcGGCCu- -3'
miRNA:   3'- uuAUGUGCCGgU---UG-UGACCG-CCGGcg -5'
26822 3' -57 NC_005809.1 + 15061 0.71 0.242987
Target:  5'- --gAC-CGcGCCGAgaaGCUGGCGGCCGa -3'
miRNA:   3'- uuaUGuGC-CGGUUg--UGACCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 15111 0.72 0.223748
Target:  5'- cGUGCGCGGC--GCGCUGGCauaccagcgccagGGCCuGCg -3'
miRNA:   3'- uUAUGUGCCGguUGUGACCG-------------CCGG-CG- -5'
26822 3' -57 NC_005809.1 + 15836 0.69 0.338813
Target:  5'- --cGCAgCGGgC-GCGCUGGCGGUgGCc -3'
miRNA:   3'- uuaUGU-GCCgGuUGUGACCGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 16303 0.72 0.206937
Target:  5'- cGAUGCGCGaGCCGACcagGCcGGCGGgUGCc -3'
miRNA:   3'- -UUAUGUGC-CGGUUG---UGaCCGCCgGCG- -5'
26822 3' -57 NC_005809.1 + 16479 0.67 0.479783
Target:  5'- --cGCACGGUguAcCACUGGauugaGGcCCGCc -3'
miRNA:   3'- uuaUGUGCCGguU-GUGACCg----CC-GGCG- -5'
26822 3' -57 NC_005809.1 + 17026 0.66 0.511335
Target:  5'- --gACAucauCGGCUAcggggGCGCUgccGGCGGCgGCa -3'
miRNA:   3'- uuaUGU----GCCGGU-----UGUGA---CCGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 18148 0.69 0.338813
Target:  5'- --cGCGCGGCacCGACAaaucgGGcCGGCUGCg -3'
miRNA:   3'- uuaUGUGCCG--GUUGUga---CC-GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 18417 0.66 0.511335
Target:  5'- --cGCGCaGCCGucgagGCGCUGGgccaGGCgCGCa -3'
miRNA:   3'- uuaUGUGcCGGU-----UGUGACCg---CCG-GCG- -5'
26822 3' -57 NC_005809.1 + 19250 0.69 0.328101
Target:  5'- -uUGCGCGGCUAcCACgucaucccggccagUGcCGGCCGCa -3'
miRNA:   3'- uuAUGUGCCGGUuGUG--------------ACcGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 20340 0.69 0.364491
Target:  5'- ---uCGCGGCCGACAaccagGGCCGCg -3'
miRNA:   3'- uuauGUGCCGGUUGUgaccgCCGGCG- -5'
26822 3' -57 NC_005809.1 + 20722 0.68 0.413043
Target:  5'- --gGCACcccaucaGGCCGACaugcuGCUGGCGccguagaggcgcugcGCCGCg -3'
miRNA:   3'- uuaUGUG-------CCGGUUG-----UGACCGC---------------CGGCG- -5'
26822 3' -57 NC_005809.1 + 20812 0.67 0.449212
Target:  5'- cGUGC-CGGgCGGC-CUGuccuauguggacGCGGCCGCg -3'
miRNA:   3'- uUAUGuGCCgGUUGuGAC------------CGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 21175 0.74 0.152793
Target:  5'- --aGCGCGGCCu--GCUGcGCGGCCuGCu -3'
miRNA:   3'- uuaUGUGCCGGuugUGAC-CGCCGG-CG- -5'
26822 3' -57 NC_005809.1 + 21575 0.66 0.522046
Target:  5'- cGUGCcgcuCGGCCAcuuCGgUGGCGGUCa- -3'
miRNA:   3'- uUAUGu---GCCGGUu--GUgACCGCCGGcg -5'
26822 3' -57 NC_005809.1 + 21748 0.73 0.201398
Target:  5'- --gGCGCGGCCGcguccACAUaGGacaGGCCGCc -3'
miRNA:   3'- uuaUGUGCCGGU-----UGUGaCCg--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 22232 0.7 0.322437
Target:  5'- --gACGCGGCC----CUGGUugucGGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGuuguGACCG----CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.