miRNA display CGI


Results 101 - 120 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 29573 0.68 0.41019
Target:  5'- -cUGCGCGGCCugUACgagaacGGCGGgCGg -3'
miRNA:   3'- uuAUGUGCCGGuuGUGa-----CCGCCgGCg -5'
26822 3' -57 NC_005809.1 + 30431 0.72 0.224348
Target:  5'- -cUACGCGGaagcgCAGCGCgUGGCGcGUCGCg -3'
miRNA:   3'- uuAUGUGCCg----GUUGUG-ACCGC-CGGCG- -5'
26822 3' -57 NC_005809.1 + 30565 0.69 0.33055
Target:  5'- ---cCACGGCC-GCGCUGcUGGCCGa -3'
miRNA:   3'- uuauGUGCCGGuUGUGACcGCCGGCg -5'
26822 3' -57 NC_005809.1 + 30986 0.7 0.322437
Target:  5'- ----gGCGGCCAGC-C-GGCGGCCcuggGCg -3'
miRNA:   3'- uuaugUGCCGGUUGuGaCCGCCGG----CG- -5'
26822 3' -57 NC_005809.1 + 31401 0.7 0.325664
Target:  5'- ---cCACGGCCGACcagcgcacgcaacguGCgcaGGCGGCCcaGCa -3'
miRNA:   3'- uuauGUGCCGGUUG---------------UGa--CCGCCGG--CG- -5'
26822 3' -57 NC_005809.1 + 31520 0.68 0.419748
Target:  5'- -cUGCugGGCCu-CGCUGuGuuGCCGUg -3'
miRNA:   3'- uuAUGugCCGGuuGUGAC-CgcCGGCG- -5'
26822 3' -57 NC_005809.1 + 31588 0.7 0.298995
Target:  5'- cAUGCAaucCGGCCuggccgaACaGGUGGCCGCa -3'
miRNA:   3'- uUAUGU---GCCGGuug----UGaCCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 32094 0.7 0.322437
Target:  5'- --aACACGGCCGcguugcucaacGCcCUGGCcGCUGCc -3'
miRNA:   3'- uuaUGUGCCGGU-----------UGuGACCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 32536 0.69 0.347225
Target:  5'- uGAUGC-CGGCCAGgaugcugcCGCcGGCGauGCCGCu -3'
miRNA:   3'- -UUAUGuGCCGGUU--------GUGaCCGC--CGGCG- -5'
26822 3' -57 NC_005809.1 + 32585 0.69 0.338813
Target:  5'- --gACACcGCCGACgcugugaccaaGCUGGCccgcgucaagGGCCGCg -3'
miRNA:   3'- uuaUGUGcCGGUUG-----------UGACCG----------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 32918 0.66 0.490199
Target:  5'- ---cCACGGCCuGCAC-GGCuGCUGUu -3'
miRNA:   3'- uuauGUGCCGGuUGUGaCCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 33013 0.68 0.397038
Target:  5'- gGAUGCuc-GCCAccggcgagcagaucGCACUGGCcgaacagGGCCGCa -3'
miRNA:   3'- -UUAUGugcCGGU--------------UGUGACCG-------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 33176 0.68 0.381437
Target:  5'- ---cCGCGGCCugcgcgacaugcaGugGCUGcacaaugcacGCGGCCGCa -3'
miRNA:   3'- uuauGUGCCGG-------------UugUGAC----------CGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 33197 0.76 0.12537
Target:  5'- --gGCACGGCCAcCGCUGGCGaauCCGg -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGCc--GGCg -5'
26822 3' -57 NC_005809.1 + 33221 0.76 0.12537
Target:  5'- --gGCACGGCCAcCGCUGGCGaauCCGg -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGCc--GGCg -5'
26822 3' -57 NC_005809.1 + 33245 0.75 0.136516
Target:  5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5'
26822 3' -57 NC_005809.1 + 33293 0.76 0.118414
Target:  5'- --gGCACGGCCAcCGCUGGCuaucGCgGCa -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGc---CGgCG- -5'
26822 3' -57 NC_005809.1 + 33341 0.76 0.12537
Target:  5'- --gGCACGGCCAcCGCUGGCGaauCCGg -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGCc--GGCg -5'
26822 3' -57 NC_005809.1 + 33365 0.76 0.12537
Target:  5'- --gGCACGGCCAcCGCUGGCGaauCCGg -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGCc--GGCg -5'
26822 3' -57 NC_005809.1 + 33389 0.75 0.136516
Target:  5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.