miRNA display CGI


Results 121 - 140 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 33437 0.76 0.118414
Target:  5'- --gGCACGGCCAcCGCUGGCuaucGCgGCa -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGc---CGgCG- -5'
26822 3' -57 NC_005809.1 + 33485 0.75 0.136516
Target:  5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5'
26822 3' -57 NC_005809.1 + 33533 0.75 0.136516
Target:  5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5'
26822 3' -57 NC_005809.1 + 33581 0.76 0.118414
Target:  5'- --gGCACGGCCAcCGCUGGCuaucGCgGCa -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGc---CGgCG- -5'
26822 3' -57 NC_005809.1 + 33606 0.7 0.30666
Target:  5'- ---nCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuauGUGCCGGUuGUGACCG-----------CCGGcg -5'
26822 3' -57 NC_005809.1 + 33653 0.76 0.111819
Target:  5'- --gGCACGGCCAcCGCUGGCGaGaaaggagaacuCCGCa -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGC-C-----------GGCG- -5'
26822 3' -57 NC_005809.1 + 33722 0.66 0.511335
Target:  5'- --gGCGaccgaGGCCAacGCGCUGGC--CCGCg -3'
miRNA:   3'- uuaUGUg----CCGGU--UGUGACCGccGGCG- -5'
26822 3' -57 NC_005809.1 + 33787 0.7 0.322437
Target:  5'- --gGCGCGGCCGACcCaucGUGcGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGuGac-CGC-CGGCG- -5'
26822 3' -57 NC_005809.1 + 33886 0.7 0.298995
Target:  5'- -cUGCGCGGCgcACACcugGGCGGCgcaGCa -3'
miRNA:   3'- uuAUGUGCCGguUGUGa--CCGCCGg--CG- -5'
26822 3' -57 NC_005809.1 + 34190 0.66 0.522045
Target:  5'- -cUACGCaGCCAGCGCga--GGCCGg -3'
miRNA:   3'- uuAUGUGcCGGUUGUGaccgCCGGCg -5'
26822 3' -57 NC_005809.1 + 34355 0.72 0.236635
Target:  5'- --gGCACGGCCGcGCACgaacUGGCCGCc -3'
miRNA:   3'- uuaUGUGCCGGU-UGUGacc-GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 35168 0.66 0.51027
Target:  5'- cGGUGCcCGGCUucaaGCUGGUGgaaggucGCCGCg -3'
miRNA:   3'- -UUAUGuGCCGGuug-UGACCGC-------CGGCG- -5'
26822 3' -57 NC_005809.1 + 35687 0.67 0.469477
Target:  5'- uGAUGCGauGCCAGCAgaUGGUGGaCGUg -3'
miRNA:   3'- -UUAUGUgcCGGUUGUg-ACCGCCgGCG- -5'
26822 3' -57 NC_005809.1 + 35896 0.7 0.314473
Target:  5'- --aACACGGCCcugAACAUcGGCGuGgCGCa -3'
miRNA:   3'- uuaUGUGCCGG---UUGUGaCCGC-CgGCG- -5'
26822 3' -57 NC_005809.1 + 35937 0.66 0.511335
Target:  5'- --gACAcucCGGCCAAgcgcgcgaaGCUGGCGGCgGa -3'
miRNA:   3'- uuaUGU---GCCGGUUg--------UGACCGCCGgCg -5'
26822 3' -57 NC_005809.1 + 36408 0.68 0.382344
Target:  5'- --gAC-CGGCCuGCGCUGGgaagaugaCGGCgGCg -3'
miRNA:   3'- uuaUGuGCCGGuUGUGACC--------GCCGgCG- -5'
26822 3' -57 NC_005809.1 + 36760 0.66 0.488107
Target:  5'- --gGCAC-GCCAugcccgacuaucCGCUGGCGcuGCCGCg -3'
miRNA:   3'- uuaUGUGcCGGUu-----------GUGACCGC--CGGCG- -5'
26822 3' -57 NC_005809.1 + 37004 0.71 0.242987
Target:  5'- ----gGCGGCCAGCGUUGGC-GCCGUc -3'
miRNA:   3'- uuaugUGCCGGUUGUGACCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 37466 0.68 0.419748
Target:  5'- --gGCGCcaGCCGcaccggACGCUGGgcCGGCCGCc -3'
miRNA:   3'- uuaUGUGc-CGGU------UGUGACC--GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 37626 0.66 0.490199
Target:  5'- cGAUACGCGGCU-GCAUcgUGGCGcCCGa -3'
miRNA:   3'- -UUAUGUGCCGGuUGUG--ACCGCcGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.