miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 28542 0.69 0.347225
Target:  5'- ----aACGGCaCGAC-CUuGCGGCCGCc -3'
miRNA:   3'- uuaugUGCCG-GUUGuGAcCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 27828 0.7 0.284113
Target:  5'- --cGCGCuGCCcGCGgUGGCgccGGCCGCg -3'
miRNA:   3'- uuaUGUGcCGGuUGUgACCG---CCGGCG- -5'
26822 3' -57 NC_005809.1 + 27649 0.67 0.459285
Target:  5'- --cGCGCaGUCGGCACUugaGGCcGGCCaGCa -3'
miRNA:   3'- uuaUGUGcCGGUUGUGA---CCG-CCGG-CG- -5'
26822 3' -57 NC_005809.1 + 27421 0.72 0.21841
Target:  5'- --cGCGCcuGGCgCAccGCGCccGGCGGCCGCa -3'
miRNA:   3'- uuaUGUG--CCG-GU--UGUGa-CCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 26626 0.72 0.212607
Target:  5'- --gACAUGGCCuACGCgaaGGCG-CCGCa -3'
miRNA:   3'- uuaUGUGCCGGuUGUGa--CCGCcGGCG- -5'
26822 3' -57 NC_005809.1 + 26529 0.67 0.469477
Target:  5'- cGUGCGCgaacuGGCCuACaACUGGCaGGCCa- -3'
miRNA:   3'- uUAUGUG-----CCGGuUG-UGACCG-CCGGcg -5'
26822 3' -57 NC_005809.1 + 26321 0.67 0.479783
Target:  5'- --gGCACGGUCuuGACgcgcaccgcgaACUGGCcGcGCCGCu -3'
miRNA:   3'- uuaUGUGCCGG--UUG-----------UGACCG-C-CGGCG- -5'
26822 3' -57 NC_005809.1 + 26280 0.66 0.529594
Target:  5'- cGUGCGCGacgacgaccggguaGCCuuC-CgGGUGGCCGCg -3'
miRNA:   3'- uUAUGUGC--------------CGGuuGuGaCCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 26257 0.69 0.354922
Target:  5'- --gGCACGggcacccGCCGGC-CUGGuCGGCuCGCg -3'
miRNA:   3'- uuaUGUGC-------CGGUUGuGACC-GCCG-GCG- -5'
26822 3' -57 NC_005809.1 + 25755 0.68 0.373345
Target:  5'- --cGCugGGC--GCGCUgcugGGCGGCgGCa -3'
miRNA:   3'- uuaUGugCCGguUGUGA----CCGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 25126 0.66 0.511335
Target:  5'- --gGCACcuGGCCucGAUGCUGGCGGggccaCUGCu -3'
miRNA:   3'- uuaUGUG--CCGG--UUGUGACCGCC-----GGCG- -5'
26822 3' -57 NC_005809.1 + 24560 0.67 0.469477
Target:  5'- --aGCGCGGCgAugGCgaGGCcGGCCa- -3'
miRNA:   3'- uuaUGUGCCGgUugUGa-CCG-CCGGcg -5'
26822 3' -57 NC_005809.1 + 24103 0.69 0.355784
Target:  5'- --gACGaauCGGCCGACGCcgccGGCG-CCGCg -3'
miRNA:   3'- uuaUGU---GCCGGUUGUGa---CCGCcGGCG- -5'
26822 3' -57 NC_005809.1 + 23521 0.7 0.29148
Target:  5'- --gACACGcugaUCGACGCcgccGGCGGCCGCu -3'
miRNA:   3'- uuaUGUGCc---GGUUGUGa---CCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 23380 0.66 0.522045
Target:  5'- ----aACGGCCAgaacaucaucgACGCcGGCGGCacggGCa -3'
miRNA:   3'- uuaugUGCCGGU-----------UGUGaCCGCCGg---CG- -5'
26822 3' -57 NC_005809.1 + 23297 0.77 0.099937
Target:  5'- gAAUGCcuguuuGCGGCCGGCACUGGCcgggaugacgugguaGCCGCg -3'
miRNA:   3'- -UUAUG------UGCCGGUUGUGACCGc--------------CGGCG- -5'
26822 3' -57 NC_005809.1 + 22640 0.68 0.400768
Target:  5'- ---cCACGGCCGACAaggaguucGGCGGCgacaaGCu -3'
miRNA:   3'- uuauGUGCCGGUUGUga------CCGCCGg----CG- -5'
26822 3' -57 NC_005809.1 + 22348 0.67 0.479783
Target:  5'- --gGCACccaaGGCCAACAgc--CGGCCGCg -3'
miRNA:   3'- uuaUGUG----CCGGUUGUgaccGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 22232 0.7 0.322437
Target:  5'- --gACGCGGCC----CUGGUugucGGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGuuguGACCG----CCGGCG- -5'
26822 3' -57 NC_005809.1 + 21748 0.73 0.201398
Target:  5'- --gGCGCGGCCGcguccACAUaGGacaGGCCGCc -3'
miRNA:   3'- uuaUGUGCCGGU-----UGUGaCCg--CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.