Results 41 - 60 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26822 | 3' | -57 | NC_005809.1 | + | 33293 | 0.76 | 0.118414 |
Target: 5'- --gGCACGGCCAcCGCUGGCuaucGCgGCa -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCGc---CGgCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 38379 | 0.76 | 0.114415 |
Target: 5'- cGUGCucGCGGCCAACAUgcccgccaucgaGGCGGCCGg -3' miRNA: 3'- uUAUG--UGCCGGUUGUGa-----------CCGCCGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33653 | 0.76 | 0.111819 |
Target: 5'- --gGCACGGCCAcCGCUGGCGaGaaaggagaacuCCGCa -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCGC-C-----------GGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 6593 | 0.77 | 0.105569 |
Target: 5'- --aGCACGGCCGGCACcacguagagcaUGGCGuaguccGCCGCc -3' miRNA: 3'- uuaUGUGCCGGUUGUG-----------ACCGC------CGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 23297 | 0.77 | 0.099937 |
Target: 5'- gAAUGCcuguuuGCGGCCGGCACUGGCcgggaugacgugguaGCCGCg -3' miRNA: 3'- -UUAUG------UGCCGGUUGUGACCGc--------------CGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33245 | 0.75 | 0.136516 |
Target: 5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33389 | 0.75 | 0.136516 |
Target: 5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 34355 | 0.72 | 0.236635 |
Target: 5'- --gGCACGGCCGcGCACgaacUGGCCGCc -3' miRNA: 3'- uuaUGUGCCGGU-UGUGacc-GCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 27421 | 0.72 | 0.21841 |
Target: 5'- --cGCGCcuGGCgCAccGCGCccGGCGGCCGCa -3' miRNA: 3'- uuaUGUG--CCG-GU--UGUGa-CCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 7490 | 0.72 | 0.21841 |
Target: 5'- uGGUAUA-GGCCccuuGCaACUGGCGGCgCGCg -3' miRNA: 3'- -UUAUGUgCCGGu---UG-UGACCGCCG-GCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 8846 | 0.72 | 0.212607 |
Target: 5'- --aACGCgGGCCAGCGCguUGGCcucGGUCGCc -3' miRNA: 3'- uuaUGUG-CCGGUUGUG--ACCG---CCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 12007 | 0.72 | 0.206937 |
Target: 5'- --cACGuCGGCCAGCAgc-GCGGCCGUg -3' miRNA: 3'- uuaUGU-GCCGGUUGUgacCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 21748 | 0.73 | 0.201398 |
Target: 5'- --gGCGCGGCCGcguccACAUaGGacaGGCCGCc -3' miRNA: 3'- uuaUGUGCCGGU-----UGUGaCCg--CCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 1463 | 0.74 | 0.166137 |
Target: 5'- --gGCGCGGUCGGCGgccucCUGGCaGGCCGg -3' miRNA: 3'- uuaUGUGCCGGUUGU-----GACCG-CCGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 8783 | 0.74 | 0.161576 |
Target: 5'- --cACGCGGC--GCACgaugGGuCGGCCGCg -3' miRNA: 3'- uuaUGUGCCGguUGUGa---CC-GCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 21175 | 0.74 | 0.152793 |
Target: 5'- --aGCGCGGCCu--GCUGcGCGGCCuGCu -3' miRNA: 3'- uuaUGUGCCGGuugUGAC-CGCCGG-CG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 11168 | 0.75 | 0.144445 |
Target: 5'- --cGCACGuuGCguGCGCUGGuCGGCCGUg -3' miRNA: 3'- uuaUGUGC--CGguUGUGACC-GCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 888 | 0.75 | 0.140429 |
Target: 5'- --aGCAgGGCCAGCAUggUGGgguucauccCGGCCGCg -3' miRNA: 3'- uuaUGUgCCGGUUGUG--ACC---------GCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33533 | 0.75 | 0.136516 |
Target: 5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33485 | 0.75 | 0.136516 |
Target: 5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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