miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 8123 0.71 0.262898
Target:  5'- --cGCGCGGCCGGCGUUGGUugugGGCgUGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGUGACCG----CCG-GCG- -5'
26822 3' -57 NC_005809.1 + 27828 0.7 0.284113
Target:  5'- --cGCGCuGCCcGCGgUGGCgccGGCCGCg -3'
miRNA:   3'- uuaUGUGcCGGuUGUgACCG---CCGGCG- -5'
26822 3' -57 NC_005809.1 + 33886 0.7 0.298995
Target:  5'- -cUGCGCGGCgcACACcugGGCGGCgcaGCa -3'
miRNA:   3'- uuAUGUGCCGguUGUGa--CCGCCGg--CG- -5'
26822 3' -57 NC_005809.1 + 33606 0.7 0.30666
Target:  5'- ---nCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuauGUGCCGGUuGUGACCG-----------CCGGcg -5'
26822 3' -57 NC_005809.1 + 32094 0.7 0.322437
Target:  5'- --aACACGGCCGcguugcucaacGCcCUGGCcGCUGCc -3'
miRNA:   3'- uuaUGUGCCGGU-----------UGuGACCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 22232 0.7 0.322437
Target:  5'- --gACGCGGCC----CUGGUugucGGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGuuguGACCG----CCGGCG- -5'
26822 3' -57 NC_005809.1 + 39736 0.69 0.330551
Target:  5'- uGGUGCugGcGCCGcuGCGC--GUGGCCGCg -3'
miRNA:   3'- -UUAUGugC-CGGU--UGUGacCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 9326 0.71 0.256117
Target:  5'- --cGCAC-GUCGGCGCggcgGGCGGCgGCa -3'
miRNA:   3'- uuaUGUGcCGGUUGUGa---CCGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 34355 0.72 0.236635
Target:  5'- --gGCACGGCCGcGCACgaacUGGCCGCc -3'
miRNA:   3'- uuaUGUGCCGGU-UGUGacc-GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 21175 0.74 0.152793
Target:  5'- --aGCGCGGCCu--GCUGcGCGGCCuGCu -3'
miRNA:   3'- uuaUGUGCCGGuugUGAC-CGCCGG-CG- -5'
26822 3' -57 NC_005809.1 + 8783 0.74 0.161576
Target:  5'- --cACGCGGC--GCACgaugGGuCGGCCGCg -3'
miRNA:   3'- uuaUGUGCCGguUGUGa---CC-GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 1463 0.74 0.166137
Target:  5'- --gGCGCGGUCGGCGgccucCUGGCaGGCCGg -3'
miRNA:   3'- uuaUGUGCCGGUUGU-----GACCG-CCGGCg -5'
26822 3' -57 NC_005809.1 + 21748 0.73 0.201398
Target:  5'- --gGCGCGGCCGcguccACAUaGGacaGGCCGCc -3'
miRNA:   3'- uuaUGUGCCGGU-----UGUGaCCg--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 12007 0.72 0.206937
Target:  5'- --cACGuCGGCCAGCAgc-GCGGCCGUg -3'
miRNA:   3'- uuaUGU-GCCGGUUGUgacCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 8846 0.72 0.212607
Target:  5'- --aACGCgGGCCAGCGCguUGGCcucGGUCGCc -3'
miRNA:   3'- uuaUGUG-CCGGUUGUG--ACCG---CCGGCG- -5'
26822 3' -57 NC_005809.1 + 7490 0.72 0.21841
Target:  5'- uGGUAUA-GGCCccuuGCaACUGGCGGCgCGCg -3'
miRNA:   3'- -UUAUGUgCCGGu---UG-UGACCGCCG-GCG- -5'
26822 3' -57 NC_005809.1 + 27421 0.72 0.21841
Target:  5'- --cGCGCcuGGCgCAccGCGCccGGCGGCCGCa -3'
miRNA:   3'- uuaUGUG--CCG-GU--UGUGa-CCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 1763 0.66 0.532841
Target:  5'- --gGC-CGGCCuGCGcCUGGCGcGUCGg -3'
miRNA:   3'- uuaUGuGCCGGuUGU-GACCGC-CGGCg -5'
26822 3' -57 NC_005809.1 + 38553 0.82 0.041197
Target:  5'- --cGCGCGGCaUGACGCUGGUGGCCGg -3'
miRNA:   3'- uuaUGUGCCG-GUUGUGACCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 29410 0.79 0.068194
Target:  5'- --aGCGCGGCCGACACUGGCcgacaucgaGG-CGCa -3'
miRNA:   3'- uuaUGUGCCGGUUGUGACCG---------CCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.