miRNA display CGI


Results 81 - 100 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 15111 0.72 0.223748
Target:  5'- cGUGCGCGGC--GCGCUGGCauaccagcgccagGGCCuGCg -3'
miRNA:   3'- uUAUGUGCCGguUGUGACCG-------------CCGG-CG- -5'
26822 3' -57 NC_005809.1 + 30431 0.72 0.224348
Target:  5'- -cUACGCGGaagcgCAGCGCgUGGCGcGUCGCg -3'
miRNA:   3'- uuAUGUGCCg----GUUGUG-ACCGC-CGGCG- -5'
26822 3' -57 NC_005809.1 + 5138 0.71 0.242987
Target:  5'- -cUGCaACGuGCC-GCGCaGGCGGCCGUc -3'
miRNA:   3'- uuAUG-UGC-CGGuUGUGaCCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 15061 0.71 0.242987
Target:  5'- --gAC-CGcGCCGAgaaGCUGGCGGCCGa -3'
miRNA:   3'- uuaUGuGC-CGGUUg--UGACCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 37004 0.71 0.242987
Target:  5'- ----gGCGGCCAGCGUUGGC-GCCGUc -3'
miRNA:   3'- uuaugUGCCGGUUGUGACCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 2570 0.7 0.29148
Target:  5'- --gACACGGcCCAGCGCgUGcGCGcgcuuGCCGCc -3'
miRNA:   3'- uuaUGUGCC-GGUUGUG-AC-CGC-----CGGCG- -5'
26822 3' -57 NC_005809.1 + 23521 0.7 0.29148
Target:  5'- --gACACGcugaUCGACGCcgccGGCGGCCGCu -3'
miRNA:   3'- uuaUGUGCc---GGUUGUGa---CCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 38122 0.7 0.29148
Target:  5'- uGUGCAUGacgguGCCAcCGCUGGCGGCuucccccuggCGCg -3'
miRNA:   3'- uUAUGUGC-----CGGUuGUGACCGCCG----------GCG- -5'
26822 3' -57 NC_005809.1 + 13901 0.72 0.212607
Target:  5'- --gGCGC-GCC-GCGCUGGCgaGGCCGCc -3'
miRNA:   3'- uuaUGUGcCGGuUGUGACCG--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 16303 0.72 0.206937
Target:  5'- cGAUGCGCGaGCCGACcagGCcGGCGGgUGCc -3'
miRNA:   3'- -UUAUGUGC-CGGUUG---UGaCCGCCgGCG- -5'
26822 3' -57 NC_005809.1 + 38553 0.82 0.041197
Target:  5'- --cGCGCGGCaUGACGCUGGUGGCCGg -3'
miRNA:   3'- uuaUGUGCCG-GUUGUGACCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 29410 0.79 0.068194
Target:  5'- --aGCGCGGCCGACACUGGCcgacaucgaGG-CGCa -3'
miRNA:   3'- uuaUGUGCCGGUUGUGACCG---------CCgGCG- -5'
26822 3' -57 NC_005809.1 + 5633 0.77 0.102568
Target:  5'- --gGCGCGGCgCAGCuuGCUGGUGGCUGg -3'
miRNA:   3'- uuaUGUGCCG-GUUG--UGACCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 14014 0.77 0.102568
Target:  5'- cGUGCGCGccGCgAugGCcGGCGGCCGCa -3'
miRNA:   3'- uUAUGUGC--CGgUugUGaCCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 5343 0.77 0.105569
Target:  5'- --aGCAUGGCaucGCGCUGcGUGGCCGCc -3'
miRNA:   3'- uuaUGUGCCGgu-UGUGAC-CGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 38300 0.76 0.115072
Target:  5'- --gACACGGCCAucaccaugccgGCGCUGaCGGCCGg -3'
miRNA:   3'- uuaUGUGCCGGU-----------UGUGACcGCCGGCg -5'
26822 3' -57 NC_005809.1 + 1965 0.75 0.139638
Target:  5'- --cGCGCGGCCcugggggaaggcACGCUGuaGGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGu-----------UGUGACcgCCGGCG- -5'
26822 3' -57 NC_005809.1 + 37957 0.75 0.148566
Target:  5'- --aGCGCgGGCCAACAUUGGCcuGGCUGa -3'
miRNA:   3'- uuaUGUG-CCGGUUGUGACCG--CCGGCg -5'
26822 3' -57 NC_005809.1 + 4634 0.75 0.148566
Target:  5'- gGAUGCugGGCC-ACGCUGcGuCGGCCa- -3'
miRNA:   3'- -UUAUGugCCGGuUGUGAC-C-GCCGGcg -5'
26822 3' -57 NC_005809.1 + 14741 0.74 0.152793
Target:  5'- --gGCGCGGCCGGCGCcaccgcgGGCaGCgCGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGUGa------CCGcCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.