Results 121 - 140 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26822 | 3' | -57 | NC_005809.1 | + | 14014 | 0.77 | 0.102568 |
Target: 5'- cGUGCGCGccGCgAugGCcGGCGGCCGCa -3' miRNA: 3'- uUAUGUGC--CGgUugUGaCCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 5633 | 0.77 | 0.102568 |
Target: 5'- --gGCGCGGCgCAGCuuGCUGGUGGCUGg -3' miRNA: 3'- uuaUGUGCCG-GUUG--UGACCGCCGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 29410 | 0.79 | 0.068194 |
Target: 5'- --aGCGCGGCCGACACUGGCcgacaucgaGG-CGCa -3' miRNA: 3'- uuaUGUGCCGGUUGUGACCG---------CCgGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 38553 | 0.82 | 0.041197 |
Target: 5'- --cGCGCGGCaUGACGCUGGUGGCCGg -3' miRNA: 3'- uuaUGUGCCG-GUUGUGACCGCCGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 2739 | 0.72 | 0.21841 |
Target: 5'- --aGCGCGGcCCGGCGCUgcucgGGCGuGCCGa -3' miRNA: 3'- uuaUGUGCC-GGUUGUGA-----CCGC-CGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 15111 | 0.72 | 0.223748 |
Target: 5'- cGUGCGCGGC--GCGCUGGCauaccagcgccagGGCCuGCg -3' miRNA: 3'- uUAUGUGCCGguUGUGACCG-------------CCGG-CG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33787 | 0.7 | 0.322437 |
Target: 5'- --gGCGCGGCCGACcCaucGUGcGCCGCg -3' miRNA: 3'- uuaUGUGCCGGUUGuGac-CGC-CGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 30986 | 0.7 | 0.322437 |
Target: 5'- ----gGCGGCCAGC-C-GGCGGCCcuggGCg -3' miRNA: 3'- uuaugUGCCGGUUGuGaCCGCCGG----CG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 2016 | 0.7 | 0.322437 |
Target: 5'- uGGUACGCcaCCAGCACcGGCauaccGGCCGCc -3' miRNA: 3'- -UUAUGUGccGGUUGUGaCCG-----CCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 35896 | 0.7 | 0.314473 |
Target: 5'- --aACACGGCCcugAACAUcGGCGuGgCGCa -3' miRNA: 3'- uuaUGUGCCGG---UUGUGaCCGC-CgGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 41242 | 0.7 | 0.312113 |
Target: 5'- ---cCACGGCUuccucgcgcuugucGGC-CUGGUGGCCGUc -3' miRNA: 3'- uuauGUGCCGG--------------UUGuGACCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 31588 | 0.7 | 0.298995 |
Target: 5'- cAUGCAaucCGGCCuggccgaACaGGUGGCCGCa -3' miRNA: 3'- uUAUGU---GCCGGuug----UGaCCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 2388 | 0.7 | 0.298995 |
Target: 5'- --cGCACGGCa-----UGGCGGUCGCu -3' miRNA: 3'- uuaUGUGCCGguugugACCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 38122 | 0.7 | 0.29148 |
Target: 5'- uGUGCAUGacgguGCCAcCGCUGGCGGCuucccccuggCGCg -3' miRNA: 3'- uUAUGUGC-----CGGUuGUGACCGCCG----------GCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 23521 | 0.7 | 0.29148 |
Target: 5'- --gACACGcugaUCGACGCcgccGGCGGCCGCu -3' miRNA: 3'- uuaUGUGCc---GGUUGUGa---CCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 2570 | 0.7 | 0.29148 |
Target: 5'- --gACACGGcCCAGCGCgUGcGCGcgcuuGCCGCc -3' miRNA: 3'- uuaUGUGCC-GGUUGUG-AC-CGC-----CGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 37004 | 0.71 | 0.242987 |
Target: 5'- ----gGCGGCCAGCGUUGGC-GCCGUc -3' miRNA: 3'- uuaugUGCCGGUUGUGACCGcCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 15061 | 0.71 | 0.242987 |
Target: 5'- --gAC-CGcGCCGAgaaGCUGGCGGCCGa -3' miRNA: 3'- uuaUGuGC-CGGUUg--UGACCGCCGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 5138 | 0.71 | 0.242987 |
Target: 5'- -cUGCaACGuGCC-GCGCaGGCGGCCGUc -3' miRNA: 3'- uuAUG-UGC-CGGuUGUGaCCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 30431 | 0.72 | 0.224348 |
Target: 5'- -cUACGCGGaagcgCAGCGCgUGGCGcGUCGCg -3' miRNA: 3'- uuAUGUGCCg----GUUGUG-ACCGC-CGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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