miRNA display CGI


Results 141 - 158 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 19250 0.69 0.328101
Target:  5'- -uUGCGCGGCUAcCACgucaucccggccagUGcCGGCCGCa -3'
miRNA:   3'- uuAUGUGCCGGUuGUG--------------ACcGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 30565 0.69 0.33055
Target:  5'- ---cCACGGCC-GCGCUGcUGGCCGa -3'
miRNA:   3'- uuauGUGCCGGuUGUGACcGCCGGCg -5'
26822 3' -57 NC_005809.1 + 15836 0.69 0.338813
Target:  5'- --cGCAgCGGgC-GCGCUGGCGGUgGCc -3'
miRNA:   3'- uuaUGU-GCCgGuUGUGACCGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 12563 0.69 0.338813
Target:  5'- --gGCGCGGCCGugcaguuggaGCACgaUGGCccguucgacGGCUGCa -3'
miRNA:   3'- uuaUGUGCCGGU----------UGUG--ACCG---------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 18148 0.69 0.338813
Target:  5'- --cGCGCGGCacCGACAaaucgGGcCGGCUGCg -3'
miRNA:   3'- uuaUGUGCCG--GUUGUga---CC-GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 13089 0.69 0.347224
Target:  5'- --gACACGaCCGACGC-GGaacuGGCCGCg -3'
miRNA:   3'- uuaUGUGCcGGUUGUGaCCg---CCGGCG- -5'
26822 3' -57 NC_005809.1 + 10205 0.69 0.347224
Target:  5'- -cUGgGCGGCCGGgGCcucGGCGGCgacCGCa -3'
miRNA:   3'- uuAUgUGCCGGUUgUGa--CCGCCG---GCG- -5'
26822 3' -57 NC_005809.1 + 33787 0.7 0.322437
Target:  5'- --gGCGCGGCCGACcCaucGUGcGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGuGac-CGC-CGGCG- -5'
26822 3' -57 NC_005809.1 + 30986 0.7 0.322437
Target:  5'- ----gGCGGCCAGC-C-GGCGGCCcuggGCg -3'
miRNA:   3'- uuaugUGCCGGUUGuGaCCGCCGG----CG- -5'
26822 3' -57 NC_005809.1 + 2570 0.7 0.29148
Target:  5'- --gACACGGcCCAGCGCgUGcGCGcgcuuGCCGCc -3'
miRNA:   3'- uuaUGUGCC-GGUUGUG-AC-CGC-----CGGCG- -5'
26822 3' -57 NC_005809.1 + 23521 0.7 0.29148
Target:  5'- --gACACGcugaUCGACGCcgccGGCGGCCGCu -3'
miRNA:   3'- uuaUGUGCc---GGUUGUGa---CCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 38122 0.7 0.29148
Target:  5'- uGUGCAUGacgguGCCAcCGCUGGCGGCuucccccuggCGCg -3'
miRNA:   3'- uUAUGUGC-----CGGUuGUGACCGCCG----------GCG- -5'
26822 3' -57 NC_005809.1 + 2388 0.7 0.298995
Target:  5'- --cGCACGGCa-----UGGCGGUCGCu -3'
miRNA:   3'- uuaUGUGCCGguugugACCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 31588 0.7 0.298995
Target:  5'- cAUGCAaucCGGCCuggccgaACaGGUGGCCGCa -3'
miRNA:   3'- uUAUGU---GCCGGuug----UGaCCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 41242 0.7 0.312113
Target:  5'- ---cCACGGCUuccucgcgcuugucGGC-CUGGUGGCCGUc -3'
miRNA:   3'- uuauGUGCCGG--------------UUGuGACCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 35896 0.7 0.314473
Target:  5'- --aACACGGCCcugAACAUcGGCGuGgCGCa -3'
miRNA:   3'- uuaUGUGCCGG---UUGUGaCCGC-CgGCG- -5'
26822 3' -57 NC_005809.1 + 2016 0.7 0.322437
Target:  5'- uGGUACGCcaCCAGCACcGGCauaccGGCCGCc -3'
miRNA:   3'- -UUAUGUGccGGUUGUGaCCG-----CCGGCG- -5'
26822 3' -57 NC_005809.1 + 38977 1.1 0.000351
Target:  5'- gAAUACACGGCCAACACUGGCGGCCGCg -3'
miRNA:   3'- -UUAUGUGCCGGUUGUGACCGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.