miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 30565 0.69 0.33055
Target:  5'- ---cCACGGCC-GCGCUGcUGGCCGa -3'
miRNA:   3'- uuauGUGCCGGuUGUGACcGCCGGCg -5'
26822 3' -57 NC_005809.1 + 30431 0.72 0.224348
Target:  5'- -cUACGCGGaagcgCAGCGCgUGGCGcGUCGCg -3'
miRNA:   3'- uuAUGUGCCg----GUUGUG-ACCGC-CGGCG- -5'
26822 3' -57 NC_005809.1 + 29410 0.79 0.068194
Target:  5'- --aGCGCGGCCGACACUGGCcgacaucgaGG-CGCa -3'
miRNA:   3'- uuaUGUGCCGGUUGUGACCG---------CCgGCG- -5'
26822 3' -57 NC_005809.1 + 19250 0.69 0.328101
Target:  5'- -uUGCGCGGCUAcCACgucaucccggccagUGcCGGCCGCa -3'
miRNA:   3'- uuAUGUGCCGGUuGUG--------------ACcGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 38553 0.82 0.041197
Target:  5'- --cGCGCGGCaUGACGCUGGUGGCCGg -3'
miRNA:   3'- uuaUGUGCCG-GUUGUGACCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 12485 0.67 0.469477
Target:  5'- --gACAagGGCCGugGCgcccgGGCG-CCGCa -3'
miRNA:   3'- uuaUGUg-CCGGUugUGa----CCGCcGGCG- -5'
26822 3' -57 NC_005809.1 + 14014 0.77 0.102568
Target:  5'- cGUGCGCGccGCgAugGCcGGCGGCCGCa -3'
miRNA:   3'- uUAUGUGC--CGgUugUGaCCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 20812 0.67 0.449212
Target:  5'- cGUGC-CGGgCGGC-CUGuccuauguggacGCGGCCGCg -3'
miRNA:   3'- uUAUGuGCCgGUUGuGAC------------CGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 10714 0.67 0.42944
Target:  5'- -uUGCACGGCgAg----GGCGuGCCGCa -3'
miRNA:   3'- uuAUGUGCCGgUugugaCCGC-CGGCG- -5'
26822 3' -57 NC_005809.1 + 5096 0.68 0.395181
Target:  5'- --cAgGCGGCCGGCccagcguccggugcgGCUGGC-GCCGUu -3'
miRNA:   3'- uuaUgUGCCGGUUG---------------UGACCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 20340 0.69 0.364491
Target:  5'- ---uCGCGGCCGACAaccagGGCCGCg -3'
miRNA:   3'- uuauGUGCCGGUUGUgaccgCCGGCG- -5'
26822 3' -57 NC_005809.1 + 10205 0.69 0.347224
Target:  5'- -cUGgGCGGCCGGgGCcucGGCGGCgacCGCa -3'
miRNA:   3'- uuAUgUGCCGGUUgUGa--CCGCCG---GCG- -5'
26822 3' -57 NC_005809.1 + 12563 0.69 0.338813
Target:  5'- --gGCGCGGCCGugcaguuggaGCACgaUGGCccguucgacGGCUGCa -3'
miRNA:   3'- uuaUGUGCCGGU----------UGUG--ACCG---------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 30986 0.7 0.322437
Target:  5'- ----gGCGGCCAGC-C-GGCGGCCcuggGCg -3'
miRNA:   3'- uuaugUGCCGGUUGuGaCCGCCGG----CG- -5'
26822 3' -57 NC_005809.1 + 41242 0.7 0.312113
Target:  5'- ---cCACGGCUuccucgcgcuugucGGC-CUGGUGGCCGUc -3'
miRNA:   3'- uuauGUGCCGG--------------UUGuGACCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 23521 0.7 0.29148
Target:  5'- --gACACGcugaUCGACGCcgccGGCGGCCGCu -3'
miRNA:   3'- uuaUGUGCc---GGUUGUGa---CCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 15061 0.71 0.242987
Target:  5'- --gAC-CGcGCCGAgaaGCUGGCGGCCGa -3'
miRNA:   3'- uuaUGuGC-CGGUUg--UGACCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 42158 0.72 0.214912
Target:  5'- ---gUACGGCCGACgaucaccgccgugcuGCUGGUGGgCGCc -3'
miRNA:   3'- uuauGUGCCGGUUG---------------UGACCGCCgGCG- -5'
26822 3' -57 NC_005809.1 + 16303 0.72 0.206937
Target:  5'- cGAUGCGCGaGCCGACcagGCcGGCGGgUGCc -3'
miRNA:   3'- -UUAUGUGC-CGGUUG---UGaCCGCCgGCG- -5'
26822 3' -57 NC_005809.1 + 1965 0.75 0.139638
Target:  5'- --cGCGCGGCCcugggggaaggcACGCUGuaGGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGu-----------UGUGACcgCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.