Results 81 - 100 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26822 | 3' | -57 | NC_005809.1 | + | 28909 | 0.69 | 0.347224 |
Target: 5'- cGGUGCGCGGUCAuauCACcaaggacaUGGaCGGCgCGCc -3' miRNA: 3'- -UUAUGUGCCGGUu--GUG--------ACC-GCCG-GCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33437 | 0.76 | 0.118414 |
Target: 5'- --gGCACGGCCAcCGCUGGCuaucGCgGCa -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCGc---CGgCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 5565 | 0.68 | 0.419748 |
Target: 5'- cGGUAUcgACGgcGCCAACGCUGGCcGCCa- -3' miRNA: 3'- -UUAUG--UGC--CGGUUGUGACCGcCGGcg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 20722 | 0.68 | 0.413043 |
Target: 5'- --gGCACcccaucaGGCCGACaugcuGCUGGCGccguagaggcgcugcGCCGCg -3' miRNA: 3'- uuaUGUG-------CCGGUUG-----UGACCGC---------------CGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 14849 | 0.68 | 0.419748 |
Target: 5'- cGUugGCGGCCAGCGCcgcacGCuGGgCGCc -3' miRNA: 3'- uUAugUGCCGGUUGUGac---CG-CCgGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 31520 | 0.68 | 0.419748 |
Target: 5'- -cUGCugGGCCu-CGCUGuGuuGCCGUg -3' miRNA: 3'- uuAUGugCCGGuuGUGAC-CgcCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 455 | 0.75 | 0.128988 |
Target: 5'- -cUGCGCGGCCAGCuuGCgGGCGcuGUCGCg -3' miRNA: 3'- uuAUGUGCCGGUUG--UGaCCGC--CGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 37466 | 0.68 | 0.419748 |
Target: 5'- --gGCGCcaGCCGcaccggACGCUGGgcCGGCCGCc -3' miRNA: 3'- uuaUGUGc-CGGU------UGUGACC--GCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 3574 | 0.71 | 0.262898 |
Target: 5'- --gGCugGGCguACACcgauccGCGGCCGCc -3' miRNA: 3'- uuaUGugCCGguUGUGac----CGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 9326 | 0.71 | 0.256117 |
Target: 5'- --cGCAC-GUCGGCGCggcgGGCGGCgGCa -3' miRNA: 3'- uuaUGUGcCGGUUGUGa---CCGCCGgCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 34355 | 0.72 | 0.236635 |
Target: 5'- --gGCACGGCCGcGCACgaacUGGCCGCc -3' miRNA: 3'- uuaUGUGCCGGU-UGUGacc-GCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 7490 | 0.72 | 0.21841 |
Target: 5'- uGGUAUA-GGCCccuuGCaACUGGCGGCgCGCg -3' miRNA: 3'- -UUAUGUgCCGGu---UG-UGACCGCCG-GCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 12565 | 0.67 | 0.459286 |
Target: 5'- -uUGC-CGGCCucGCGCUGcGCGGCg-- -3' miRNA: 3'- uuAUGuGCCGGu-UGUGAC-CGCCGgcg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 7667 | 0.67 | 0.449213 |
Target: 5'- cGUACACGcGCCGuucuUUGGCGGCgaucUGCg -3' miRNA: 3'- uUAUGUGC-CGGUugu-GACCGCCG----GCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 27421 | 0.72 | 0.21841 |
Target: 5'- --cGCGCcuGGCgCAccGCGCccGGCGGCCGCa -3' miRNA: 3'- uuaUGUG--CCG-GU--UGUGa-CCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 6716 | 0.67 | 0.449213 |
Target: 5'- --aACACGGUgAaaagccgcuGCGCUgGGCcGCCGCg -3' miRNA: 3'- uuaUGUGCCGgU---------UGUGA-CCGcCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 3863 | 0.67 | 0.449213 |
Target: 5'- uGUAcCAgGcGCCGuCGCUGuaGGCCGCg -3' miRNA: 3'- uUAU-GUgC-CGGUuGUGACcgCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 40697 | 0.67 | 0.439263 |
Target: 5'- --cACcCGGCCAGCGCcGGCcacgGGCUGa -3' miRNA: 3'- uuaUGuGCCGGUUGUGaCCG----CCGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 14904 | 0.67 | 0.439263 |
Target: 5'- -cUGCGCGGCgAucuGCuGCUGGCcGGCCu- -3' miRNA: 3'- uuAUGUGCCGgU---UG-UGACCG-CCGGcg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 37932 | 0.67 | 0.429441 |
Target: 5'- --cGCgAUGGCCGACGCaGcGUGGCCcaGCa -3' miRNA: 3'- uuaUG-UGCCGGUUGUGaC-CGCCGG--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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