miRNA display CGI


Results 121 - 140 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 14904 0.67 0.439263
Target:  5'- -cUGCGCGGCgAucuGCuGCUGGCcGGCCu- -3'
miRNA:   3'- uuAUGUGCCGgU---UG-UGACCG-CCGGcg -5'
26822 3' -57 NC_005809.1 + 40697 0.67 0.439263
Target:  5'- --cACcCGGCCAGCGCcGGCcacgGGCUGa -3'
miRNA:   3'- uuaUGuGCCGGUUGUGaCCG----CCGGCg -5'
26822 3' -57 NC_005809.1 + 3863 0.67 0.449213
Target:  5'- uGUAcCAgGcGCCGuCGCUGuaGGCCGCg -3'
miRNA:   3'- uUAU-GUgC-CGGUuGUGACcgCCGGCG- -5'
26822 3' -57 NC_005809.1 + 6716 0.67 0.449213
Target:  5'- --aACACGGUgAaaagccgcuGCGCUgGGCcGCCGCg -3'
miRNA:   3'- uuaUGUGCCGgU---------UGUGA-CCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 41673 0.68 0.390565
Target:  5'- --aGCGCGGUCAACuuCUGgaacaacGCGGCgGCc -3'
miRNA:   3'- uuaUGUGCCGGUUGu-GAC-------CGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 36408 0.68 0.382344
Target:  5'- --gAC-CGGCCuGCGCUGGgaagaugaCGGCgGCg -3'
miRNA:   3'- uuaUGuGCCGGuUGUGACC--------GCCGgCG- -5'
26822 3' -57 NC_005809.1 + 41173 0.68 0.379629
Target:  5'- --gGgGCGGCCAugAgUGaaaccguugugcgcGUGGCCGCg -3'
miRNA:   3'- uuaUgUGCCGGUugUgAC--------------CGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 38721 0.66 0.526354
Target:  5'- --aGCugGGCgGcgaggugcgcaaaguGCGCUGGauuGGUCGCa -3'
miRNA:   3'- uuaUGugCCGgU---------------UGUGACCg--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 685 0.66 0.532842
Target:  5'- ---cUACGG-CGGCGCcGGCcgGGCCGCc -3'
miRNA:   3'- uuauGUGCCgGUUGUGaCCG--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 33533 0.75 0.136516
Target:  5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5'
26822 3' -57 NC_005809.1 + 22232 0.7 0.322437
Target:  5'- --gACGCGGCC----CUGGUugucGGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGuuguGACCG----CCGGCG- -5'
26822 3' -57 NC_005809.1 + 39736 0.69 0.330551
Target:  5'- uGGUGCugGcGCCGcuGCGC--GUGGCCGCg -3'
miRNA:   3'- -UUAUGugC-CGGU--UGUGacCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 32585 0.69 0.338813
Target:  5'- --gACACcGCCGACgcugugaccaaGCUGGCccgcgucaagGGCCGCg -3'
miRNA:   3'- uuaUGUGcCGGUUG-----------UGACCG----------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 32536 0.69 0.347225
Target:  5'- uGAUGC-CGGCCAGgaugcugcCGCcGGCGauGCCGCu -3'
miRNA:   3'- -UUAUGuGCCGGUU--------GUGaCCGC--CGGCG- -5'
26822 3' -57 NC_005809.1 + 28542 0.69 0.347225
Target:  5'- ----aACGGCaCGAC-CUuGCGGCCGCc -3'
miRNA:   3'- uuaugUGCCG-GUUGuGAcCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 26257 0.69 0.354922
Target:  5'- --gGCACGggcacccGCCGGC-CUGGuCGGCuCGCg -3'
miRNA:   3'- uuaUGUGC-------CGGUUGuGACC-GCCG-GCG- -5'
26822 3' -57 NC_005809.1 + 8885 0.69 0.355784
Target:  5'- --gGCGCGGgCAucauugugaaugGCGCUaucGGCGGCgCGCu -3'
miRNA:   3'- uuaUGUGCCgGU------------UGUGA---CCGCCG-GCG- -5'
26822 3' -57 NC_005809.1 + 4258 0.69 0.355784
Target:  5'- cGGUGC-CGGCCGucaGCGCcGGCauggugauGGCCGUg -3'
miRNA:   3'- -UUAUGuGCCGGU---UGUGaCCG--------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 2591 0.68 0.373345
Target:  5'- -uUGCAaGGCCAGCAggUUGGCgaGGUCGUa -3'
miRNA:   3'- uuAUGUgCCGGUUGU--GACCG--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 25755 0.68 0.373345
Target:  5'- --cGCugGGC--GCGCUgcugGGCGGCgGCa -3'
miRNA:   3'- uuaUGugCCGguUGUGA----CCGCCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.