miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26823 5' -65 NC_005809.1 + 38201 0.73 0.065703
Target:  5'- --gCGCCUGGCUGCGCaUCcGCCUGCc -3'
miRNA:   3'- aagGCGGGCCGACGCG-AGcUGGGCGc -5'
26823 5' -65 NC_005809.1 + 41847 0.66 0.225197
Target:  5'- aUCCGCCag---GCGCUCGACuuggCCGUGg -3'
miRNA:   3'- aAGGCGGgccgaCGCGAGCUG----GGCGC- -5'
26823 5' -65 NC_005809.1 + 9282 0.66 0.221808
Target:  5'- -cCCGguacaCCGGCUGCGCauugacuuccucggCGACCUgGCGg -3'
miRNA:   3'- aaGGCg----GGCCGACGCGa-------------GCUGGG-CGC- -5'
26823 5' -65 NC_005809.1 + 18120 0.66 0.208683
Target:  5'- -gCCGUCCGGUacgucgaacuUGuCGCcCGGCUCGCGc -3'
miRNA:   3'- aaGGCGGGCCG----------AC-GCGaGCUGGGCGC- -5'
26823 5' -65 NC_005809.1 + 32786 0.66 0.203414
Target:  5'- gUCCGCCCucGGCaccuCGCUgGugCUGCGc -3'
miRNA:   3'- aAGGCGGG--CCGac--GCGAgCugGGCGC- -5'
26823 5' -65 NC_005809.1 + 12723 0.67 0.169687
Target:  5'- -gUCGCCCGGCccguugGUGCUggGugCCGCGc -3'
miRNA:   3'- aaGGCGGGCCGa-----CGCGAg-CugGGCGC- -5'
26823 5' -65 NC_005809.1 + 32924 0.67 0.169687
Target:  5'- -cCUGCaCGGCUGCuGUUCGGCCaggGCGa -3'
miRNA:   3'- aaGGCGgGCCGACG-CGAGCUGGg--CGC- -5'
26823 5' -65 NC_005809.1 + 14885 0.67 0.169687
Target:  5'- -gUUGCCCGGCuuucagggucUGCGCggCGAUCUGCu -3'
miRNA:   3'- aaGGCGGGCCG----------ACGCGa-GCUGGGCGc -5'
26823 5' -65 NC_005809.1 + 10749 0.68 0.165298
Target:  5'- -cUCGCCaagGGC-GCGCUCGacuucgGCCCGCa -3'
miRNA:   3'- aaGGCGGg--CCGaCGCGAGC------UGGGCGc -5'
26823 5' -65 NC_005809.1 + 20608 0.68 0.165298
Target:  5'- cUUCGCCaGGCgGCGUcgcaggucggugUCGGCCUGCGc -3'
miRNA:   3'- aAGGCGGgCCGaCGCG------------AGCUGGGCGC- -5'
26823 5' -65 NC_005809.1 + 12903 0.71 0.084274
Target:  5'- -gUCGCCUuuGGCgaUGCGCUCGGCCgCGCc -3'
miRNA:   3'- aaGGCGGG--CCG--ACGCGAGCUGG-GCGc -5'
26823 5' -65 NC_005809.1 + 36833 0.7 0.099332
Target:  5'- -gCUGCCCGGC-GCGCUgggCGAUCUGUGc -3'
miRNA:   3'- aaGGCGGGCCGaCGCGA---GCUGGGCGC- -5'
26823 5' -65 NC_005809.1 + 24136 0.7 0.113786
Target:  5'- gUCCaG-CCGGCUGCGCgccUGGCCCaGCGc -3'
miRNA:   3'- aAGG-CgGGCCGACGCGa--GCUGGG-CGC- -5'
26823 5' -65 NC_005809.1 + 15712 0.69 0.120102
Target:  5'- gUCCGCCUgggcaucgaacuGGCgcgaggccaUGCGCUCGACauaCCGCa -3'
miRNA:   3'- aAGGCGGG------------CCG---------ACGCGAGCUG---GGCGc -5'
26823 5' -65 NC_005809.1 + 39834 0.68 0.148748
Target:  5'- --aCGCCCGaGCaGCGC-CGGgCCGCGc -3'
miRNA:   3'- aagGCGGGC-CGaCGCGaGCUgGGCGC- -5'
26823 5' -65 NC_005809.1 + 35305 0.68 0.162714
Target:  5'- -aCCGCCgagaagcugcacaaGGCcgGCGacaUCGGCCCGCGc -3'
miRNA:   3'- aaGGCGGg-------------CCGa-CGCg--AGCUGGGCGC- -5'
26823 5' -65 NC_005809.1 + 9390 0.66 0.225197
Target:  5'- -gCCGCCC-GCcGCGC-CGACgUGCGc -3'
miRNA:   3'- aaGGCGGGcCGaCGCGaGCUGgGCGC- -5'
26823 5' -65 NC_005809.1 + 35102 0.76 0.03969
Target:  5'- gUgCGCUCGGCggcGUGCUCGAUCUGCGg -3'
miRNA:   3'- aAgGCGGGCCGa--CGCGAGCUGGGCGC- -5'
26823 5' -65 NC_005809.1 + 31310 0.71 0.091509
Target:  5'- -gUCGCCCGGCUcGUaGCUgGGCCgCGCGc -3'
miRNA:   3'- aaGGCGGGCCGA-CG-CGAgCUGG-GCGC- -5'
26823 5' -65 NC_005809.1 + 42276 0.68 0.141051
Target:  5'- -aCCaUCCGGgUGUGCUUGGCCUGCc -3'
miRNA:   3'- aaGGcGGGCCgACGCGAGCUGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.