miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26824 3' -56.4 NC_005809.1 + 13153 0.75 0.174857
Target:  5'- aCUGCGCCUCGAUguCGGCcagugucggccGCGCuGGGc -3'
miRNA:   3'- -GAUGUGGAGCUGguGCCG-----------CGCGuUCC- -5'
26824 3' -56.4 NC_005809.1 + 24161 0.76 0.161099
Target:  5'- -aGCGCCUCGACgGCuGCGCGCuucGGc -3'
miRNA:   3'- gaUGUGGAGCUGgUGcCGCGCGuu-CC- -5'
26824 3' -56.4 NC_005809.1 + 14661 0.76 0.144276
Target:  5'- uUGCACCUUGGCCugGGUGCGgGu-- -3'
miRNA:   3'- gAUGUGGAGCUGGugCCGCGCgUucc -5'
26824 3' -56.4 NC_005809.1 + 228 0.79 0.103018
Target:  5'- -cGCACCUCGGCauUGGCGCGCuGGGu -3'
miRNA:   3'- gaUGUGGAGCUGguGCCGCGCGuUCC- -5'
26824 3' -56.4 NC_005809.1 + 8619 0.71 0.326142
Target:  5'- uUGCGCuuCUCGGCCgcuGCGGUG-GCGAGGu -3'
miRNA:   3'- gAUGUG--GAGCUGG---UGCCGCgCGUUCC- -5'
26824 3' -56.4 NC_005809.1 + 10576 0.7 0.385493
Target:  5'- -aGCGCCUCGGgcguaguacCCA-GGCGCGCAGc- -3'
miRNA:   3'- gaUGUGGAGCU---------GGUgCCGCGCGUUcc -5'
26824 3' -56.4 NC_005809.1 + 34489 0.68 0.451554
Target:  5'- gUACA--UCGACUACGuGCGCGCcuuGGGc -3'
miRNA:   3'- gAUGUggAGCUGGUGC-CGCGCGu--UCC- -5'
26824 3' -56.4 NC_005809.1 + 29759 0.68 0.451554
Target:  5'- ---gGCCUCGGCUgcugccagGCGcGUGCGCGAGa -3'
miRNA:   3'- gaugUGGAGCUGG--------UGC-CGCGCGUUCc -5'
26824 3' -56.4 NC_005809.1 + 8861 0.68 0.451554
Target:  5'- gUugGCCUCGgucGCCACGaaGCGgGCGcGGg -3'
miRNA:   3'- gAugUGGAGC---UGGUGC--CGCgCGUuCC- -5'
26824 3' -56.4 NC_005809.1 + 29382 0.69 0.441735
Target:  5'- -aGC-CCUCgGACU-CGGCGCGguAGGc -3'
miRNA:   3'- gaUGuGGAG-CUGGuGCCGCGCguUCC- -5'
26824 3' -56.4 NC_005809.1 + 24103 0.69 0.441735
Target:  5'- -gGCACCcCGcuaCAUGcGCGCGUAGGGg -3'
miRNA:   3'- gaUGUGGaGCug-GUGC-CGCGCGUUCC- -5'
26824 3' -56.4 NC_005809.1 + 10686 0.69 0.432038
Target:  5'- uUGCGUCUUGACgGCaGCGCGCAcGGc -3'
miRNA:   3'- gAUGUGGAGCUGgUGcCGCGCGUuCC- -5'
26824 3' -56.4 NC_005809.1 + 4742 0.69 0.432038
Target:  5'- -cGCGauguUCUCGGCCACGGC-CGCGAu- -3'
miRNA:   3'- gaUGU----GGAGCUGGUGCCGcGCGUUcc -5'
26824 3' -56.4 NC_005809.1 + 9882 0.69 0.422466
Target:  5'- gCUGCuuCUCGGCCA-GGCGCGUg--- -3'
miRNA:   3'- -GAUGugGAGCUGGUgCCGCGCGuucc -5'
26824 3' -56.4 NC_005809.1 + 31500 0.69 0.413023
Target:  5'- -cAUACCUUG-CCGcCGGCGUGCugcuGGGc -3'
miRNA:   3'- gaUGUGGAGCuGGU-GCCGCGCGu---UCC- -5'
26824 3' -56.4 NC_005809.1 + 2035 0.69 0.412086
Target:  5'- -cGCGCaggCGAUagaaCACGGCGCGCAauuccucGGGg -3'
miRNA:   3'- gaUGUGga-GCUG----GUGCCGCGCGU-------UCC- -5'
26824 3' -56.4 NC_005809.1 + 7080 0.7 0.394534
Target:  5'- -gACGCCgCGGCCuacccACGGCGCGCc--- -3'
miRNA:   3'- gaUGUGGaGCUGG-----UGCCGCGCGuucc -5'
26824 3' -56.4 NC_005809.1 + 8116 0.7 0.385493
Target:  5'- cCUGCACCgcgCGGCCgGCguugguugugGGCGUGCGGGu -3'
miRNA:   3'- -GAUGUGGa--GCUGG-UG----------CCGCGCGUUCc -5'
26824 3' -56.4 NC_005809.1 + 12534 0.7 0.385493
Target:  5'- gUGCugCUCGACCuCGGCGuCGguGa- -3'
miRNA:   3'- gAUGugGAGCUGGuGCCGC-GCguUcc -5'
26824 3' -56.4 NC_005809.1 + 42013 0.66 0.625526
Target:  5'- ---gGCCUCaGCCuCGGCGCgggugaacgggucagGCGGGGg -3'
miRNA:   3'- gaugUGGAGcUGGuGCCGCG---------------CGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.