miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26824 3' -56.4 NC_005809.1 + 42013 0.66 0.625526
Target:  5'- ---gGCCUCaGCCuCGGCGCgggugaacgggucagGCGGGGg -3'
miRNA:   3'- gaugUGGAGcUGGuGCCGCG---------------CGUUCC- -5'
26824 3' -56.4 NC_005809.1 + 40977 0.66 0.620012
Target:  5'- -aACGCaCUCGACCACcaggaaGGCgGCGgccacuaCAAGGa -3'
miRNA:   3'- gaUGUG-GAGCUGGUG------CCG-CGC-------GUUCC- -5'
26824 3' -56.4 NC_005809.1 + 40355 0.68 0.49197
Target:  5'- uUAUACCgCGA-CAUGGaGCGCGAGGc -3'
miRNA:   3'- gAUGUGGaGCUgGUGCCgCGCGUUCC- -5'
26824 3' -56.4 NC_005809.1 + 40128 0.66 0.621115
Target:  5'- -aGCGCCUgGGCCGCaguuucGGCGCcuucaaauCGAGGu -3'
miRNA:   3'- gaUGUGGAgCUGGUG------CCGCGc-------GUUCC- -5'
26824 3' -56.4 NC_005809.1 + 39861 0.68 0.491969
Target:  5'- -gACACCUCGACguugCGCaGGUGCGCc--- -3'
miRNA:   3'- gaUGUGGAGCUG----GUG-CCGCGCGuucc -5'
26824 3' -56.4 NC_005809.1 + 38972 0.68 0.451554
Target:  5'- -aGCACCUCGuCCACGccuuCGUGCGAa- -3'
miRNA:   3'- gaUGUGGAGCuGGUGCc---GCGCGUUcc -5'
26824 3' -56.4 NC_005809.1 + 38036 0.72 0.295395
Target:  5'- -aACugCUCGGCCuCGGCGaugaugucgGCGGGGa -3'
miRNA:   3'- gaUGugGAGCUGGuGCCGCg--------CGUUCC- -5'
26824 3' -56.4 NC_005809.1 + 37230 0.69 0.438812
Target:  5'- -aGCACCUucugCGuacgcuCCACGGCGCggauggcggcguggGCGAGGu -3'
miRNA:   3'- gaUGUGGA----GCu-----GGUGCCGCG--------------CGUUCC- -5'
26824 3' -56.4 NC_005809.1 + 37092 0.74 0.202268
Target:  5'- -gGCACCUCGACCagaccaucaacgaccGCGGCGUGau-GGu -3'
miRNA:   3'- gaUGUGGAGCUGG---------------UGCCGCGCguuCC- -5'
26824 3' -56.4 NC_005809.1 + 36824 0.74 0.222556
Target:  5'- -gGCGCaCUCGcuGCC-CGGCGCGCuGGGc -3'
miRNA:   3'- gaUGUG-GAGC--UGGuGCCGCGCGuUCC- -5'
26824 3' -56.4 NC_005809.1 + 36737 0.66 0.599093
Target:  5'- --cCACUUCGACCgcACGGUGCuGCGGc- -3'
miRNA:   3'- gauGUGGAGCUGG--UGCCGCG-CGUUcc -5'
26824 3' -56.4 NC_005809.1 + 36258 0.68 0.481703
Target:  5'- uUACACCaggUCGGCCgccGCGGCGCcCucGGu -3'
miRNA:   3'- gAUGUGG---AGCUGG---UGCCGCGcGuuCC- -5'
26824 3' -56.4 NC_005809.1 + 36055 0.68 0.461491
Target:  5'- --cCGCCUCGGCCAgGGgGCuGCGGu- -3'
miRNA:   3'- gauGUGGAGCUGGUgCCgCG-CGUUcc -5'
26824 3' -56.4 NC_005809.1 + 35933 0.79 0.097323
Target:  5'- -cACACCUUGuCCugGGCGCGCAu-- -3'
miRNA:   3'- gaUGUGGAGCuGGugCCGCGCGUucc -5'
26824 3' -56.4 NC_005809.1 + 35767 0.69 0.413023
Target:  5'- uCUugGCCUCGAacagaACGGgGaaaGCGAGGc -3'
miRNA:   3'- -GAugUGGAGCUgg---UGCCgCg--CGUUCC- -5'
26824 3' -56.4 NC_005809.1 + 35407 0.72 0.295395
Target:  5'- cCUGCaACUUCGGCCACuGGCGCGgGc-- -3'
miRNA:   3'- -GAUG-UGGAGCUGGUG-CCGCGCgUucc -5'
26824 3' -56.4 NC_005809.1 + 35286 0.68 0.481703
Target:  5'- -cGCgGCCUCGACCuCGGCGUcguucguccaGCGGcGGg -3'
miRNA:   3'- gaUG-UGGAGCUGGuGCCGCG----------CGUU-CC- -5'
26824 3' -56.4 NC_005809.1 + 34761 0.67 0.523345
Target:  5'- -cGCGCCUCGACCAUaucaGCGaguGGGa -3'
miRNA:   3'- gaUGUGGAGCUGGUGccg-CGCgu-UCC- -5'
26824 3' -56.4 NC_005809.1 + 34581 0.74 0.224914
Target:  5'- -cGCugCUCGACCAUcaguucaccgcccaaGGCGCGCAc-- -3'
miRNA:   3'- gaUGugGAGCUGGUG---------------CCGCGCGUucc -5'
26824 3' -56.4 NC_005809.1 + 34489 0.68 0.451554
Target:  5'- gUACA--UCGACUACGuGCGCGCcuuGGGc -3'
miRNA:   3'- gAUGUggAGCUGGUGC-CGCGCGu--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.