miRNA display CGI


Results 21 - 40 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26824 3' -56.4 NC_005809.1 + 8981 0.73 0.228491
Target:  5'- -aACGCCUCGAUUuccuCGcCGCGCGGGGg -3'
miRNA:   3'- gaUGUGGAGCUGGu---GCcGCGCGUUCC- -5'
26824 3' -56.4 NC_005809.1 + 9326 0.68 0.481704
Target:  5'- -cGCACgUCGG-CGCGGCGgGCGGcGGc -3'
miRNA:   3'- gaUGUGgAGCUgGUGCCGCgCGUU-CC- -5'
26824 3' -56.4 NC_005809.1 + 9721 0.71 0.302865
Target:  5'- aUACGCCUCGaaGCCGCGGgcgaacugcuCGUGguGGGc -3'
miRNA:   3'- gAUGUGGAGC--UGGUGCC----------GCGCguUCC- -5'
26824 3' -56.4 NC_005809.1 + 9868 0.66 0.610094
Target:  5'- -cGCugCUUGACUgguuCGGCGUGCGc-- -3'
miRNA:   3'- gaUGugGAGCUGGu---GCCGCGCGUucc -5'
26824 3' -56.4 NC_005809.1 + 9882 0.69 0.422466
Target:  5'- gCUGCuuCUCGGCCA-GGCGCGUg--- -3'
miRNA:   3'- -GAUGugGAGCUGGUgCCGCGCGuucc -5'
26824 3' -56.4 NC_005809.1 + 10576 0.7 0.385493
Target:  5'- -aGCGCCUCGGgcguaguacCCA-GGCGCGCAGc- -3'
miRNA:   3'- gaUGUGGAGCU---------GGUgCCGCGCGUUcc -5'
26824 3' -56.4 NC_005809.1 + 10686 0.69 0.432038
Target:  5'- uUGCGUCUUGACgGCaGCGCGCAcGGc -3'
miRNA:   3'- gAUGUGGAGCUGgUGcCGCGCGUuCC- -5'
26824 3' -56.4 NC_005809.1 + 10743 0.68 0.481704
Target:  5'- uUGCugCUCG-CCAagGGCGCGCucGa -3'
miRNA:   3'- gAUGugGAGCuGGUg-CCGCGCGuuCc -5'
26824 3' -56.4 NC_005809.1 + 11100 0.66 0.584835
Target:  5'- -aGCACCuugUCGGCUGCGGCcaauugguucaaacGUGCGAGc -3'
miRNA:   3'- gaUGUGG---AGCUGGUGCCG--------------CGCGUUCc -5'
26824 3' -56.4 NC_005809.1 + 12087 0.71 0.342384
Target:  5'- -aAgACCUCGccgGCCACGGCcGCGCugcuGGc -3'
miRNA:   3'- gaUgUGGAGC---UGGUGCCG-CGCGuu--CC- -5'
26824 3' -56.4 NC_005809.1 + 12534 0.7 0.385493
Target:  5'- gUGCugCUCGACCuCGGCGuCGguGa- -3'
miRNA:   3'- gAUGugGAGCUGGuGCCGC-GCguUcc -5'
26824 3' -56.4 NC_005809.1 + 13072 0.67 0.544682
Target:  5'- aCUGCGCUgcgCGGCCuguacgagaACGGCGgGCGGu- -3'
miRNA:   3'- -GAUGUGGa--GCUGG---------UGCCGCgCGUUcc -5'
26824 3' -56.4 NC_005809.1 + 13153 0.75 0.174857
Target:  5'- aCUGCGCCUCGAUguCGGCcagugucggccGCGCuGGGc -3'
miRNA:   3'- -GAUGUGGAGCUGguGCCG-----------CGCGuUCC- -5'
26824 3' -56.4 NC_005809.1 + 13377 0.7 0.376589
Target:  5'- cCUACGCCgccuacaacgcCGGCCcCGGCGCGCu--- -3'
miRNA:   3'- -GAUGUGGa----------GCUGGuGCCGCGCGuucc -5'
26824 3' -56.4 NC_005809.1 + 13749 0.67 0.566294
Target:  5'- -gACGCCgaCGACauccuCACGGUGCGCGgucauaucaccaAGGa -3'
miRNA:   3'- gaUGUGGa-GCUG-----GUGCCGCGCGU------------UCC- -5'
26824 3' -56.4 NC_005809.1 + 14451 0.73 0.232725
Target:  5'- gCUACGCCUaCGuuCCGCGGCGCGgAugcccccgccuuccAGGa -3'
miRNA:   3'- -GAUGUGGA-GCu-GGUGCCGCGCgU--------------UCC- -5'
26824 3' -56.4 NC_005809.1 + 14661 0.76 0.144276
Target:  5'- uUGCACCUUGGCCugGGUGCGgGu-- -3'
miRNA:   3'- gAUGUGGAGCUGGugCCGCGCgUucc -5'
26824 3' -56.4 NC_005809.1 + 14810 0.66 0.610094
Target:  5'- cCUGCACCUCG---GCGGCGCuGCc--- -3'
miRNA:   3'- -GAUGUGGAGCuggUGCCGCG-CGuucc -5'
26824 3' -56.4 NC_005809.1 + 15007 0.67 0.555457
Target:  5'- -aGCAUCgcCGAgUugGGCGCGCAGucGGc -3'
miRNA:   3'- gaUGUGGa-GCUgGugCCGCGCGUU--CC- -5'
26824 3' -56.4 NC_005809.1 + 15522 0.71 0.318238
Target:  5'- -gGCAgCUUCGGCCAagGGCGCGuCAAGa -3'
miRNA:   3'- gaUGU-GGAGCUGGUg-CCGCGC-GUUCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.