miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26824 5' -54.9 NC_005809.1 + 6805 0.66 0.646412
Target:  5'- uUUCCGCUAUugaGCGCgGcGGcc-CAGCGCa -3'
miRNA:   3'- -AAGGUGAUA---CGCGgC-CCuucGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 17463 0.66 0.646412
Target:  5'- -gCCGCUgaaucgaagcgGUGCGUCGGc--GCGAUGCa -3'
miRNA:   3'- aaGGUGA-----------UACGCGGCCcuuCGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 36396 0.66 0.641858
Target:  5'- --aCGCUGcggcaagaccggccUGCGCUGGGAagaugacGGCGGCGa -3'
miRNA:   3'- aagGUGAU--------------ACGCGGCCCU-------UCGUUGCg -5'
26824 5' -54.9 NC_005809.1 + 33052 0.66 0.635024
Target:  5'- -cCCGCgugcugucGUGCGCuucauCGGGucgcgcAGCGACGCg -3'
miRNA:   3'- aaGGUGa-------UACGCG-----GCCCu-----UCGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 24794 0.66 0.635024
Target:  5'- -gCCGCgcagGCGCgGuGGAAGCGGCcCg -3'
miRNA:   3'- aaGGUGaua-CGCGgC-CCUUCGUUGcG- -5'
26824 5' -54.9 NC_005809.1 + 24278 0.66 0.635024
Target:  5'- -gCCGCU---CGCCGGacuuuGGCAGCGCc -3'
miRNA:   3'- aaGGUGAuacGCGGCCcu---UCGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 27373 0.66 0.623635
Target:  5'- -gCCugUggGCGUCguGGGAAGCcuucgccaaGGCGCg -3'
miRNA:   3'- aaGGugAuaCGCGG--CCCUUCG---------UUGCG- -5'
26824 5' -54.9 NC_005809.1 + 23515 0.66 0.612253
Target:  5'- gUUCCGCgagcGCGCCuuccAGGCGGCGCa -3'
miRNA:   3'- -AAGGUGaua-CGCGGccc-UUCGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 25616 0.67 0.589555
Target:  5'- -aCCACg--GCGgCGcGGucgccAGCAGCGCg -3'
miRNA:   3'- aaGGUGauaCGCgGC-CCu----UCGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 36895 0.67 0.589555
Target:  5'- -aUCGCccagcGCGCCGGGcAGCGaguGCGCc -3'
miRNA:   3'- aaGGUGaua--CGCGGCCCuUCGU---UGCG- -5'
26824 5' -54.9 NC_005809.1 + 8991 0.67 0.578258
Target:  5'- uUUCCuCgccGCGCgGGGGcgcuuccagcaGGCGGCGCa -3'
miRNA:   3'- -AAGGuGauaCGCGgCCCU-----------UCGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 18742 0.67 0.56701
Target:  5'- -cCCGCgugGUGUaacagGCCGGGGgcgGGCGAcCGCc -3'
miRNA:   3'- aaGGUGa--UACG-----CGGCCCU---UCGUU-GCG- -5'
26824 5' -54.9 NC_005809.1 + 22753 0.67 0.56701
Target:  5'- -gCUGCUuucGCGCUGGG-GGCAACuGCg -3'
miRNA:   3'- aaGGUGAua-CGCGGCCCuUCGUUG-CG- -5'
26824 5' -54.9 NC_005809.1 + 8230 0.67 0.56701
Target:  5'- aUCCggGCgcacGCGCaGGGAcGCAGCGCc -3'
miRNA:   3'- aAGG--UGaua-CGCGgCCCUuCGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 37151 0.67 0.555818
Target:  5'- -gCCGCcAUccGCGCCGuGGAGCGuACGCa -3'
miRNA:   3'- aaGGUGaUA--CGCGGCcCUUCGU-UGCG- -5'
26824 5' -54.9 NC_005809.1 + 28390 0.67 0.555818
Target:  5'- gUUCCAgUucGaCGCCGGcGgcGCGGCGCc -3'
miRNA:   3'- -AAGGUgAuaC-GCGGCC-CuuCGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 28281 0.67 0.54469
Target:  5'- -aCCGC---GCGCUGGGAcaCGGCGCa -3'
miRNA:   3'- aaGGUGauaCGCGGCCCUucGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 28006 0.67 0.533636
Target:  5'- aUCCcCUAcGgGUCGGGcAGCAACGg -3'
miRNA:   3'- aAGGuGAUaCgCGGCCCuUCGUUGCg -5'
26824 5' -54.9 NC_005809.1 + 16896 0.68 0.511779
Target:  5'- aUCCgaACUAUGCGCCGcGuGAAcuGCGcCGCc -3'
miRNA:   3'- aAGG--UGAUACGCGGC-C-CUU--CGUuGCG- -5'
26824 5' -54.9 NC_005809.1 + 9383 0.68 0.4903
Target:  5'- -gCCGCgccgacGUGCGCCGccaggucgccgaGGAAGuCAAUGCg -3'
miRNA:   3'- aaGGUGa-----UACGCGGC------------CCUUC-GUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.