Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26824 | 5' | -54.9 | NC_005809.1 | + | 38852 | 0.77 | 0.128971 |
Target: 5'- aUCCGCgagcaugagcggAUGCGCCGcauGggGCAGCGCg -3' miRNA: 3'- aAGGUGa-----------UACGCGGCc--CuuCGUUGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 36396 | 0.66 | 0.641858 |
Target: 5'- --aCGCUGcggcaagaccggccUGCGCUGGGAagaugacGGCGGCGa -3' miRNA: 3'- aagGUGAU--------------ACGCGGCCCU-------UCGUUGCg -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 33052 | 0.66 | 0.635024 |
Target: 5'- -cCCGCgugcugucGUGCGCuucauCGGGucgcgcAGCGACGCg -3' miRNA: 3'- aaGGUGa-------UACGCG-----GCCCu-----UCGUUGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 23515 | 0.66 | 0.612253 |
Target: 5'- gUUCCGCgagcGCGCCuuccAGGCGGCGCa -3' miRNA: 3'- -AAGGUGaua-CGCGGccc-UUCGUUGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 25616 | 0.67 | 0.589555 |
Target: 5'- -aCCACg--GCGgCGcGGucgccAGCAGCGCg -3' miRNA: 3'- aaGGUGauaCGCgGC-CCu----UCGUUGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 8991 | 0.67 | 0.578258 |
Target: 5'- uUUCCuCgccGCGCgGGGGcgcuuccagcaGGCGGCGCa -3' miRNA: 3'- -AAGGuGauaCGCGgCCCU-----------UCGUUGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 37151 | 0.67 | 0.555818 |
Target: 5'- -gCCGCcAUccGCGCCGuGGAGCGuACGCa -3' miRNA: 3'- aaGGUGaUA--CGCGGCcCUUCGU-UGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 28390 | 0.67 | 0.555818 |
Target: 5'- gUUCCAgUucGaCGCCGGcGgcGCGGCGCc -3' miRNA: 3'- -AAGGUgAuaC-GCGGCC-CuuCGUUGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 28281 | 0.67 | 0.54469 |
Target: 5'- -aCCGC---GCGCUGGGAcaCGGCGCa -3' miRNA: 3'- aaGGUGauaCGCGGCCCUucGUUGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 12156 | 0.69 | 0.458901 |
Target: 5'- cUUCCGCguagGCGUCGGGGucAGUguccGAUGCg -3' miRNA: 3'- -AAGGUGaua-CGCGGCCCU--UCG----UUGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 31016 | 0.7 | 0.390111 |
Target: 5'- gUCCACgg-GCuuGCCGGccGAGGCAaucGCGCg -3' miRNA: 3'- aAGGUGauaCG--CGGCC--CUUCGU---UGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 31529 | 0.7 | 0.37173 |
Target: 5'- -cUCGCUGUGuUGCCGuGGAAaCAGCGCc -3' miRNA: 3'- aaGGUGAUAC-GCGGC-CCUUcGUUGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 6729 | 0.7 | 0.37173 |
Target: 5'- -gCCGCU--GCGCUGGGccGCcGCGCu -3' miRNA: 3'- aaGGUGAuaCGCGGCCCuuCGuUGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 17700 | 0.71 | 0.362764 |
Target: 5'- -gCCACUcgG-GCCGGGAaaugcccaucgcGGCAagcuGCGCg -3' miRNA: 3'- aaGGUGAuaCgCGGCCCU------------UCGU----UGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 9947 | 0.69 | 0.428604 |
Target: 5'- -gCCACgc-GCcugGCCGaGAAGCAGCGCg -3' miRNA: 3'- aaGGUGauaCG---CGGCcCUUCGUUGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 32441 | 0.69 | 0.418771 |
Target: 5'- cUUCCuGCUggGCgGCCGGGGccucGGCGGCGa -3' miRNA: 3'- -AAGG-UGAuaCG-CGGCCCU----UCGUUGCg -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 27958 | 0.7 | 0.380846 |
Target: 5'- aUCCGCgacGUGCUGGGcGAGCA-CGCc -3' miRNA: 3'- aAGGUGauaCGCGGCCC-UUCGUuGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 42354 | 0.73 | 0.274246 |
Target: 5'- gUCCAgUAgcUGCGCCGGaAGGC-GCGCu -3' miRNA: 3'- aAGGUgAU--ACGCGGCCcUUCGuUGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 25141 | 0.73 | 0.246634 |
Target: 5'- --gCGCgcUGCGCUGGGuGGCGAUGCu -3' miRNA: 3'- aagGUGauACGCGGCCCuUCGUUGCG- -5' |
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26824 | 5' | -54.9 | NC_005809.1 | + | 6805 | 0.66 | 0.646412 |
Target: 5'- uUUCCGCUAUugaGCGCgGcGGcc-CAGCGCa -3' miRNA: 3'- -AAGGUGAUA---CGCGgC-CCuucGUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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