miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26824 5' -54.9 NC_005809.1 + 42354 0.73 0.274246
Target:  5'- gUCCAgUAgcUGCGCCGGaAGGC-GCGCu -3'
miRNA:   3'- aAGGUgAU--ACGCGGCCcUUCGuUGCG- -5'
26824 5' -54.9 NC_005809.1 + 38852 0.77 0.128971
Target:  5'- aUCCGCgagcaugagcggAUGCGCCGcauGggGCAGCGCg -3'
miRNA:   3'- aAGGUGa-----------UACGCGGCc--CuuCGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 37151 0.67 0.555818
Target:  5'- -gCCGCcAUccGCGCCGuGGAGCGuACGCa -3'
miRNA:   3'- aaGGUGaUA--CGCGGCcCUUCGU-UGCG- -5'
26824 5' -54.9 NC_005809.1 + 36895 0.67 0.589555
Target:  5'- -aUCGCccagcGCGCCGGGcAGCGaguGCGCc -3'
miRNA:   3'- aaGGUGaua--CGCGGCCCuUCGU---UGCG- -5'
26824 5' -54.9 NC_005809.1 + 36396 0.66 0.641858
Target:  5'- --aCGCUGcggcaagaccggccUGCGCUGGGAagaugacGGCGGCGa -3'
miRNA:   3'- aagGUGAU--------------ACGCGGCCCU-------UCGUUGCg -5'
26824 5' -54.9 NC_005809.1 + 33052 0.66 0.635024
Target:  5'- -cCCGCgugcugucGUGCGCuucauCGGGucgcgcAGCGACGCg -3'
miRNA:   3'- aaGGUGa-------UACGCG-----GCCCu-----UCGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 32441 0.69 0.418771
Target:  5'- cUUCCuGCUggGCgGCCGGGGccucGGCGGCGa -3'
miRNA:   3'- -AAGG-UGAuaCG-CGGCCCU----UCGUUGCg -5'
26824 5' -54.9 NC_005809.1 + 31529 0.7 0.37173
Target:  5'- -cUCGCUGUGuUGCCGuGGAAaCAGCGCc -3'
miRNA:   3'- aaGGUGAUAC-GCGGC-CCUUcGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 31016 0.7 0.390111
Target:  5'- gUCCACgg-GCuuGCCGGccGAGGCAaucGCGCg -3'
miRNA:   3'- aAGGUGauaCG--CGGCC--CUUCGU---UGCG- -5'
26824 5' -54.9 NC_005809.1 + 28390 0.67 0.555818
Target:  5'- gUUCCAgUucGaCGCCGGcGgcGCGGCGCc -3'
miRNA:   3'- -AAGGUgAuaC-GCGGCC-CuuCGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 28281 0.67 0.54469
Target:  5'- -aCCGC---GCGCUGGGAcaCGGCGCa -3'
miRNA:   3'- aaGGUGauaCGCGGCCCUucGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 28006 0.67 0.533636
Target:  5'- aUCCcCUAcGgGUCGGGcAGCAACGg -3'
miRNA:   3'- aAGGuGAUaCgCGGCCCuUCGUUGCg -5'
26824 5' -54.9 NC_005809.1 + 27958 0.7 0.380846
Target:  5'- aUCCGCgacGUGCUGGGcGAGCA-CGCc -3'
miRNA:   3'- aAGGUGauaCGCGGCCC-UUCGUuGCG- -5'
26824 5' -54.9 NC_005809.1 + 27373 0.66 0.623635
Target:  5'- -gCCugUggGCGUCguGGGAAGCcuucgccaaGGCGCg -3'
miRNA:   3'- aaGGugAuaCGCGG--CCCUUCG---------UUGCG- -5'
26824 5' -54.9 NC_005809.1 + 25616 0.67 0.589555
Target:  5'- -aCCACg--GCGgCGcGGucgccAGCAGCGCg -3'
miRNA:   3'- aaGGUGauaCGCgGC-CCu----UCGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 25141 0.73 0.246634
Target:  5'- --gCGCgcUGCGCUGGGuGGCGAUGCu -3'
miRNA:   3'- aagGUGauACGCGGCCCuUCGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 24794 0.66 0.635024
Target:  5'- -gCCGCgcagGCGCgGuGGAAGCGGCcCg -3'
miRNA:   3'- aaGGUGaua-CGCGgC-CCUUCGUUGcG- -5'
26824 5' -54.9 NC_005809.1 + 24278 0.66 0.635024
Target:  5'- -gCCGCU---CGCCGGacuuuGGCAGCGCc -3'
miRNA:   3'- aaGGUGAuacGCGGCCcu---UCGUUGCG- -5'
26824 5' -54.9 NC_005809.1 + 23592 0.68 0.479719
Target:  5'- -aCCGC-GUGCGCCGccuGGAAGgcGCGCu -3'
miRNA:   3'- aaGGUGaUACGCGGC---CCUUCguUGCG- -5'
26824 5' -54.9 NC_005809.1 + 23515 0.66 0.612253
Target:  5'- gUUCCGCgagcGCGCCuuccAGGCGGCGCa -3'
miRNA:   3'- -AAGGUGaua-CGCGGccc-UUCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.