Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26825 | 5' | -54.3 | NC_005809.1 | + | 38225 | 1.12 | 0.000547 |
Target: 5'- aCCGGCAACGCAACGGCCAGCAUCAAGg -3' miRNA: 3'- -GGCCGUUGCGUUGCCGGUCGUAGUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 21236 | 0.85 | 0.047208 |
Target: 5'- uUGGCAaccuggGCGCggUGGCCGGCAUCAAGc -3' miRNA: 3'- gGCCGU------UGCGuuGCCGGUCGUAGUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 10034 | 0.82 | 0.078259 |
Target: 5'- gCCGGCGGCaGCAuccUGGCCGGCAUCAc- -3' miRNA: 3'- -GGCCGUUG-CGUu--GCCGGUCGUAGUuc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 19632 | 0.78 | 0.139781 |
Target: 5'- gCgGGCcGCGaCAuCGGCCAGCGUCGGGu -3' miRNA: 3'- -GgCCGuUGC-GUuGCCGGUCGUAGUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 42386 | 0.78 | 0.143809 |
Target: 5'- cCCGGCAGCGUGACGGugcCCAGCGacacCGGGg -3' miRNA: 3'- -GGCCGUUGCGUUGCC---GGUCGUa---GUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 19121 | 0.78 | 0.156097 |
Target: 5'- gCCGGCGuguacGCGCGAaccauccgcauccCGGCCGGCGUCGc- -3' miRNA: 3'- -GGCCGU-----UGCGUU-------------GCCGGUCGUAGUuc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 39638 | 0.76 | 0.190264 |
Target: 5'- gCCGcGCGACGCgguGugGGCCGGCAUgGGa -3' miRNA: 3'- -GGC-CGUUGCG---UugCCGGUCGUAgUUc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 14002 | 0.76 | 0.195037 |
Target: 5'- gCCGGUGGCcgacgugcgcgccGCGAUGGCCGGCGgccgCAAGg -3' miRNA: 3'- -GGCCGUUG-------------CGUUGCCGGUCGUa---GUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 4275 | 0.76 | 0.195574 |
Target: 5'- gCCGGCAugGUGAUGGCC-GUGUCGGc -3' miRNA: 3'- -GGCCGUugCGUUGCCGGuCGUAGUUc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 34185 | 0.76 | 0.206582 |
Target: 5'- aCUGGCuACGCAGCcagcgcgaGGCCGGguUCGAGc -3' miRNA: 3'- -GGCCGuUGCGUUG--------CCGGUCguAGUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 28403 | 0.76 | 0.212285 |
Target: 5'- gCCGGCGGCGCGGCG-CCAGUAg---- -3' miRNA: 3'- -GGCCGUUGCGUUGCcGGUCGUaguuc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 30010 | 0.76 | 0.212285 |
Target: 5'- gCCGcGCAGCGCGA-GGCCGGCAagAAa -3' miRNA: 3'- -GGC-CGUUGCGUUgCCGGUCGUagUUc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 4048 | 0.75 | 0.218122 |
Target: 5'- gCGGCGA-GCGGCaGGCCAGCGgccCAGGg -3' miRNA: 3'- gGCCGUUgCGUUG-CCGGUCGUa--GUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 27099 | 0.75 | 0.228361 |
Target: 5'- gUGGCGAUGCAAcuggacggcagcuuCGGCCAagggcGCGUCAAGa -3' miRNA: 3'- gGCCGUUGCGUU--------------GCCGGU-----CGUAGUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 2835 | 0.75 | 0.236462 |
Target: 5'- gCGGCcacGCGCAGCGgcGCCAGCAccagCGAGg -3' miRNA: 3'- gGCCGu--UGCGUUGC--CGGUCGUa---GUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 5232 | 0.74 | 0.269881 |
Target: 5'- cCCaGCAguucGCGCAGuuCGGCCGGCAggUCGGGg -3' miRNA: 3'- -GGcCGU----UGCGUU--GCCGGUCGU--AGUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 4641 | 0.74 | 0.277005 |
Target: 5'- -gGGCcACGCugcguCGGCCAucGCGUCAAGg -3' miRNA: 3'- ggCCGuUGCGuu---GCCGGU--CGUAGUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 20212 | 0.73 | 0.291702 |
Target: 5'- uUGGCAGCGCccGCGGCCGGCuGUUg-- -3' miRNA: 3'- gGCCGUUGCGu-UGCCGGUCG-UAGuuc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 21276 | 0.73 | 0.291702 |
Target: 5'- gUCGGCGuaagugucgGCcCAGCGGUCGGCGUCGAa -3' miRNA: 3'- -GGCCGU---------UGcGUUGCCGGUCGUAGUUc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 24295 | 0.73 | 0.291702 |
Target: 5'- aCCGGCc-CGCuGACGGCCGGCAa---- -3' miRNA: 3'- -GGCCGuuGCG-UUGCCGGUCGUaguuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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