Results 21 - 40 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26825 | 5' | -54.3 | NC_005809.1 | + | 5273 | 0.66 | 0.680767 |
Target: 5'- aCCGuguugauguucGCGGCGUuguCGGCCacGGCGUCGAu -3' miRNA: 3'- -GGC-----------CGUUGCGuu-GCCGG--UCGUAGUUc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 5439 | 0.69 | 0.535186 |
Target: 5'- aUGGCGGCGUGGgcgaGGUCGGUAUCGAc -3' miRNA: 3'- gGCCGUUGCGUUg---CCGGUCGUAGUUc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 5934 | 0.7 | 0.450804 |
Target: 5'- cCUGGUugucauucAGCGCAACGGuguaguccguacCCAGgGUCAAGg -3' miRNA: 3'- -GGCCG--------UUGCGUUGCC------------GGUCgUAGUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 6379 | 0.69 | 0.524295 |
Target: 5'- gUCGGCAaucagGCGCAGgcCGGCCGGCccgguguaGUCGc- -3' miRNA: 3'- -GGCCGU-----UGCGUU--GCCGGUCG--------UAGUuc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 7199 | 0.66 | 0.669555 |
Target: 5'- gCCGGgaCAGCGCGauguccACGGC-AGCAUCu-- -3' miRNA: 3'- -GGCC--GUUGCGU------UGCCGgUCGUAGuuc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 7321 | 0.66 | 0.703032 |
Target: 5'- aUGGUcugcgAACGCAGCaGCCgguuGGCGUCGAu -3' miRNA: 3'- gGCCG-----UUGCGUUGcCGG----UCGUAGUUc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 7426 | 0.67 | 0.658307 |
Target: 5'- aCCGG-AugGC--CGGCCAGCAguUCGGc -3' miRNA: 3'- -GGCCgUugCGuuGCCGGUCGU--AGUUc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 7452 | 0.67 | 0.613167 |
Target: 5'- uUCGGCcuucGCGCgAAUGGCCuuGCAcCAGGa -3' miRNA: 3'- -GGCCGu---UGCG-UUGCCGGu-CGUaGUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 7684 | 0.71 | 0.411426 |
Target: 5'- uUGGCGGCGaucuGCGGCCGGUAgcccUCGAa -3' miRNA: 3'- gGCCGUUGCgu--UGCCGGUCGU----AGUUc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 7724 | 0.67 | 0.6019 |
Target: 5'- aCuGCAGCGCAcgcucgGCGGCCGGCu----- -3' miRNA: 3'- gGcCGUUGCGU------UGCCGGUCGuaguuc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 8115 | 0.7 | 0.460969 |
Target: 5'- cCCuGCAcCGC-GCGGCCGGCGUUg-- -3' miRNA: 3'- -GGcCGUuGCGuUGCCGGUCGUAGuuc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 8440 | 0.68 | 0.557195 |
Target: 5'- gCGGaacauCGGCGCGAU-GUCGGCGUCGAGg -3' miRNA: 3'- gGCC-----GUUGCGUUGcCGGUCGUAGUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 8651 | 0.69 | 0.51349 |
Target: 5'- gCCGGCcuucauCGC-GCGGUCGGCAUUg-- -3' miRNA: 3'- -GGCCGuu----GCGuUGCCGGUCGUAGuuc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 8737 | 0.66 | 0.669555 |
Target: 5'- cCCGGCgGGCGCGGCG-CUAcCGUCAAc -3' miRNA: 3'- -GGCCG-UUGCGUUGCcGGUcGUAGUUc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 8874 | 0.69 | 0.502777 |
Target: 5'- gCGGUAGCGUu-CGGCCuuGGCGUCc-- -3' miRNA: 3'- gGCCGUUGCGuuGCCGG--UCGUAGuuc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 8912 | 0.69 | 0.492163 |
Target: 5'- aUCGGCGGCGCGcucgAUGGCUucgGGCGUgGAc -3' miRNA: 3'- -GGCCGUUGCGU----UGCCGG---UCGUAgUUc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 9208 | 0.66 | 0.685239 |
Target: 5'- cUCGGCGGCGCGGCGcacguucugcggcgcGCCcGGCggCAGu -3' miRNA: 3'- -GGCCGUUGCGUUGC---------------CGG-UCGuaGUUc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 9318 | 0.72 | 0.347048 |
Target: 5'- cCUGGCGGCGCAcgucggcGCGGCgGGCGgcggCAu- -3' miRNA: 3'- -GGCCGUUGCGU-------UGCCGgUCGUa---GUuc -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 9772 | 0.69 | 0.524295 |
Target: 5'- aCCGGCAgacGCGCAGCa-CCAGCGaggugcCGAGg -3' miRNA: 3'- -GGCCGU---UGCGUUGccGGUCGUa-----GUUC- -5' |
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26825 | 5' | -54.3 | NC_005809.1 | + | 9874 | 0.67 | 0.635744 |
Target: 5'- aCCGGC-GCGCugcuucuCGGCCAGgCgcguggcgauGUCGAGc -3' miRNA: 3'- -GGCCGuUGCGuu-----GCCGGUC-G----------UAGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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