miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26826 3' -65.2 NC_005809.1 + 41573 0.67 0.174651
Target:  5'- cCCGGCCa-GUGGCgcgGGCaGCGGGCUGAc -3'
miRNA:   3'- cGGCUGGgaCGCCG---UCG-CGCCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 41396 0.69 0.113806
Target:  5'- gGCCGACCCcgGCGGCgagacuauguggGGCGUGaccGCCGc -3'
miRNA:   3'- -CGGCUGGGa-CGCCG------------UCGCGCc--CGGUu -5'
26826 3' -65.2 NC_005809.1 + 41272 0.76 0.034219
Target:  5'- gGCCGucGCCCUgggcGCGGCGGUGUGGGCgGg -3'
miRNA:   3'- -CGGC--UGGGA----CGCCGUCGCGCCCGgUu -5'
26826 3' -65.2 NC_005809.1 + 39634 0.67 0.179289
Target:  5'- -aCGugCCgcGCGacGCGGUGUGGGCCGg -3'
miRNA:   3'- cgGCugGGa-CGC--CGUCGCGCCCGGUu -5'
26826 3' -65.2 NC_005809.1 + 38544 0.66 0.204146
Target:  5'- cGCuCGACCCgcGCGGCAuGaCGCugguGGCCGg -3'
miRNA:   3'- -CG-GCUGGGa-CGCCGU-C-GCGc---CCGGUu -5'
26826 3' -65.2 NC_005809.1 + 37978 0.66 0.19336
Target:  5'- gGCUGACCUggGCGGCAuCGCauaacuaGGaGCCAAc -3'
miRNA:   3'- -CGGCUGGGa-CGCCGUcGCG-------CC-CGGUU- -5'
26826 3' -65.2 NC_005809.1 + 37942 1.06 0.00011
Target:  5'- uGCCGACCCUGCGGCAGCGCGGGCCAAc -3'
miRNA:   3'- -CGGCUGGGACGCCGUCGCGCCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 37790 0.68 0.141258
Target:  5'- aGCCGGCgugCUGgGcGCAGUGUGGGCgAAc -3'
miRNA:   3'- -CGGCUGg--GACgC-CGUCGCGCCCGgUU- -5'
26826 3' -65.2 NC_005809.1 + 36201 0.66 0.204146
Target:  5'- gGCCGACCUgGUGuaaccCAGCGCcccggccuucGGGCCGGg -3'
miRNA:   3'- -CGGCUGGGaCGCc----GUCGCG----------CCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 36190 0.66 0.203621
Target:  5'- gGCCGGCcggCCUGCGccugauuGCcGaCGUGGGCCGGu -3'
miRNA:   3'- -CGGCUG---GGACGC-------CGuC-GCGCCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 34462 0.66 0.204146
Target:  5'- cGCCGGCC--GC-GCGGUGCaGGGCCu- -3'
miRNA:   3'- -CGGCUGGgaCGcCGUCGCG-CCCGGuu -5'
26826 3' -65.2 NC_005809.1 + 34280 0.67 0.170121
Target:  5'- cGCUGGCUgcaCUGCcccGGCAGCGUGGcccuggaaGCCGAa -3'
miRNA:   3'- -CGGCUGG---GACG---CCGUCGCGCC--------CGGUU- -5'
26826 3' -65.2 NC_005809.1 + 34169 0.69 0.120161
Target:  5'- cGCaCGGCCCUGgccgacUGGCuacgcagccAGCGCGaGGCCGGg -3'
miRNA:   3'- -CG-GCUGGGAC------GCCG---------UCGCGC-CCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 31027 0.75 0.042938
Target:  5'- uGCCGGCCga--GGCAaucGCGCGGGCCAAc -3'
miRNA:   3'- -CGGCUGGgacgCCGU---CGCGCCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 30563 0.71 0.075295
Target:  5'- uGCCGGCCgcuguagaUGCGGCAGaugGUGGGCUGGg -3'
miRNA:   3'- -CGGCUGGg-------ACGCCGUCg--CGCCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 30559 0.67 0.174651
Target:  5'- cGCCGGCCa--CGGCcGCGCugcuGGCCGAc -3'
miRNA:   3'- -CGGCUGGgacGCCGuCGCGc---CCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 30369 0.83 0.009425
Target:  5'- cCCGACCagggGCaGGCAGCGCGGGCCGGu -3'
miRNA:   3'- cGGCUGGga--CG-CCGUCGCGCCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 29935 0.68 0.149013
Target:  5'- cCCGACCCaaagGaCGGCAGCaGCGauGCCGAg -3'
miRNA:   3'- cGGCUGGGa---C-GCCGUCG-CGCc-CGGUU- -5'
26826 3' -65.2 NC_005809.1 + 29392 0.68 0.133873
Target:  5'- cGCCGGCCaaggGCGccCAGCGC-GGCCGAc -3'
miRNA:   3'- -CGGCUGGga--CGCc-GUCGCGcCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 28545 0.72 0.06531
Target:  5'- gGCaCGACCUUGCGGCcgccggccaucgcGGCGCGcacgucGGCCAc -3'
miRNA:   3'- -CG-GCUGGGACGCCG-------------UCGCGC------CCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.