miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26827 3' -64.4 NC_005809.1 + 41748 0.65 0.242086
Target:  5'- aGGGCCGCCGcguuguuccagaagUUGaCCGCGCUuucGUAGCc -3'
miRNA:   3'- -UCCGGCGGC--------------AGC-GGCGCGAcc-CGUUG- -5'
26827 3' -64.4 NC_005809.1 + 36905 0.66 0.237862
Target:  5'- -uGUCGCacaGaUCGCCcagcGCGCcGGGCAGCg -3'
miRNA:   3'- ucCGGCGg--C-AGCGG----CGCGaCCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 22797 0.66 0.237264
Target:  5'- cGGGCCggucagcaugguGCCGgacuggcccgacuUCGCCGCGCUGc-CGACa -3'
miRNA:   3'- -UCCGG------------CGGC-------------AGCGGCGCGACccGUUG- -5'
26827 3' -64.4 NC_005809.1 + 40547 0.66 0.231935
Target:  5'- gAGGCgGCCGguaUGCCgGUGCU-GGUGGCg -3'
miRNA:   3'- -UCCGgCGGCa--GCGG-CGCGAcCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 16937 0.66 0.23135
Target:  5'- aGGGCacggCGCCGUCcagcagcguGCCGCGUUGGuauggaaGCGAa -3'
miRNA:   3'- -UCCG----GCGGCAG---------CGGCGCGACC-------CGUUg -5'
26827 3' -64.4 NC_005809.1 + 12092 0.66 0.23135
Target:  5'- uGGGCaagaccuCGCCGgccacgGCCGCGCUGcuGGcCGACg -3'
miRNA:   3'- -UCCG-------GCGGCag----CGGCGCGAC--CC-GUUG- -5'
26827 3' -64.4 NC_005809.1 + 8748 0.66 0.23135
Target:  5'- aGGGCgCGCgCGUauucacgUGCCGCuucGGGCAGCa -3'
miRNA:   3'- -UCCG-GCG-GCA-------GCGGCGcgaCCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 19980 0.66 0.228439
Target:  5'- cAGGCCGCCGauguccgcguagaacUCGCCaacuugcucggcaugGCGCgccugcaucacaGGCAGCa -3'
miRNA:   3'- -UCCGGCGGC---------------AGCGG---------------CGCGac----------CCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 8977 0.66 0.226133
Target:  5'- cGGUaaCGCCucgauuuccUCGCCGCGCggGGGCGc- -3'
miRNA:   3'- uCCG--GCGGc--------AGCGGCGCGa-CCCGUug -5'
26827 3' -64.4 NC_005809.1 + 21338 0.66 0.220455
Target:  5'- uGGGCCGacaCuuaCGCCGacauGCUGGGCAu- -3'
miRNA:   3'- -UCCGGCg--Gca-GCGGCg---CGACCCGUug -5'
26827 3' -64.4 NC_005809.1 + 38532 0.66 0.220455
Target:  5'- uGGCCuGCCGcUCGCCGCGgccGGCu-- -3'
miRNA:   3'- uCCGG-CGGC-AGCGGCGCgacCCGuug -5'
26827 3' -64.4 NC_005809.1 + 15846 0.66 0.220455
Target:  5'- -cGCCGuCCGU-GUCGUGCUGGuGCcACg -3'
miRNA:   3'- ucCGGC-GGCAgCGGCGCGACC-CGuUG- -5'
26827 3' -64.4 NC_005809.1 + 25829 0.66 0.219894
Target:  5'- cGGGCCGCCGUUGgCGCcggucaguuccauGCUGGu---- -3'
miRNA:   3'- -UCCGGCGGCAGCgGCG-------------CGACCcguug -5'
26827 3' -64.4 NC_005809.1 + 37330 0.66 0.214899
Target:  5'- cAGGUCgagGCCGUagGCCGCGagcacgUGGcGCAGCa -3'
miRNA:   3'- -UCCGG---CGGCAg-CGGCGCg-----ACC-CGUUG- -5'
26827 3' -64.4 NC_005809.1 + 29495 0.66 0.214899
Target:  5'- uGGGCgCGaCGU-GCgaGCGCgUGGGCAACg -3'
miRNA:   3'- -UCCG-GCgGCAgCGg-CGCG-ACCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 18055 0.66 0.214899
Target:  5'- gGGGCCuuaCCGgCGCggggugCGUGCUGGGCcGCc -3'
miRNA:   3'- -UCCGGc--GGCaGCG------GCGCGACCCGuUG- -5'
26827 3' -64.4 NC_005809.1 + 16793 0.66 0.214899
Target:  5'- uGGUCGCCaGUUGCCaguuggucGCGCccaGGCGGCg -3'
miRNA:   3'- uCCGGCGG-CAGCGG--------CGCGac-CCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 5633 0.66 0.209463
Target:  5'- cGGCCagcguuggcGCCGUCGauaCCGUGgC-GGGCGACc -3'
miRNA:   3'- uCCGG---------CGGCAGC---GGCGC-GaCCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 29540 0.66 0.209463
Target:  5'- uGGCCGCagaGgacacccaCGCCGUGCUcgGGGUAucGCg -3'
miRNA:   3'- uCCGGCGg--Ca-------GCGGCGCGA--CCCGU--UG- -5'
26827 3' -64.4 NC_005809.1 + 38881 0.66 0.209463
Target:  5'- gGGGCaGCgCGUCGCCGUGgUGGauucGCAc- -3'
miRNA:   3'- -UCCGgCG-GCAGCGGCGCgACC----CGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.