miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26827 3' -64.4 NC_005809.1 + 16793 0.66 0.214899
Target:  5'- uGGUCGCCaGUUGCCaguuggucGCGCccaGGCGGCg -3'
miRNA:   3'- uCCGGCGG-CAGCGG--------CGCGac-CCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 16937 0.66 0.23135
Target:  5'- aGGGCacggCGCCGUCcagcagcguGCCGCGUUGGuauggaaGCGAa -3'
miRNA:   3'- -UCCG----GCGGCAG---------CGGCGCGACC-------CGUUg -5'
26827 3' -64.4 NC_005809.1 + 17655 0.68 0.174651
Target:  5'- cGGCCacgaucuugauGgCGUCGgCGgGCUGGGCGuagGCg -3'
miRNA:   3'- uCCGG-----------CgGCAGCgGCgCGACCCGU---UG- -5'
26827 3' -64.4 NC_005809.1 + 18055 0.66 0.214899
Target:  5'- gGGGCCuuaCCGgCGCggggugCGUGCUGGGCcGCc -3'
miRNA:   3'- -UCCGGc--GGCaGCG------GCGCGACCCGuUG- -5'
26827 3' -64.4 NC_005809.1 + 19980 0.66 0.228439
Target:  5'- cAGGCCGCCGauguccgcguagaacUCGCCaacuugcucggcaugGCGCgccugcaucacaGGCAGCa -3'
miRNA:   3'- -UCCGGCGGC---------------AGCGG---------------CGCGac----------CCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 20272 0.67 0.193862
Target:  5'- cGGCCGCgGgCGCUGCcaagaccgaGGGCGACg -3'
miRNA:   3'- uCCGGCGgCaGCGGCGcga------CCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 20278 0.69 0.140127
Target:  5'- uGGCCGUCGUUGcCCGCaccaguagcggguuGCUcGGCGGCc -3'
miRNA:   3'- uCCGGCGGCAGC-GGCG--------------CGAcCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 20362 0.71 0.096577
Target:  5'- cGGCCGCCGagcaaccCGCUacugGUGC-GGGCAACg -3'
miRNA:   3'- uCCGGCGGCa------GCGG----CGCGaCCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 21146 0.7 0.123462
Target:  5'- uGGCCGCCGUguCCGCGCccUGGuuCAACa -3'
miRNA:   3'- uCCGGCGGCAgcGGCGCG--ACCc-GUUG- -5'
26827 3' -64.4 NC_005809.1 + 21227 0.67 0.201012
Target:  5'- cAGGCCGCgcUGUUGaaccagggCGCggacacggcggccaaGCUGGGCAGCg -3'
miRNA:   3'- -UCCGGCG--GCAGCg-------GCG---------------CGACCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 21338 0.66 0.220455
Target:  5'- uGGGCCGacaCuuaCGCCGacauGCUGGGCAu- -3'
miRNA:   3'- -UCCGGCg--Gca-GCGGCg---CGACCCGUug -5'
26827 3' -64.4 NC_005809.1 + 22070 0.67 0.204146
Target:  5'- cGGGUCGCgGUCGgCGCGCggcucgauGGCGu- -3'
miRNA:   3'- -UCCGGCGgCAGCgGCGCGac------CCGUug -5'
26827 3' -64.4 NC_005809.1 + 22797 0.66 0.237264
Target:  5'- cGGGCCggucagcaugguGCCGgacuggcccgacuUCGCCGCGCUGc-CGACa -3'
miRNA:   3'- -UCCGG------------CGGC-------------AGCGGCGCGACccGUUG- -5'
26827 3' -64.4 NC_005809.1 + 23159 0.67 0.179289
Target:  5'- gGGcGCCGCCGUUGgCGUcg-GGGCGAg -3'
miRNA:   3'- -UC-CGGCGGCAGCgGCGcgaCCCGUUg -5'
26827 3' -64.4 NC_005809.1 + 23236 0.71 0.088916
Target:  5'- cGGCCaCCGaccgCGCCuCGCUGGGgAACa -3'
miRNA:   3'- uCCGGcGGCa---GCGGcGCGACCCgUUG- -5'
26827 3' -64.4 NC_005809.1 + 23554 0.67 0.179289
Target:  5'- uGGCCucgGCCGacaUCGCCggcaggugcggGCGggGGGCGACg -3'
miRNA:   3'- uCCGG---CGGC---AGCGG-----------CGCgaCCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 24225 0.7 0.104859
Target:  5'- aAGcGCgcaGCCGUCGagGCGCUGGGCcaGGCg -3'
miRNA:   3'- -UC-CGg--CGGCAGCggCGCGACCCG--UUG- -5'
26827 3' -64.4 NC_005809.1 + 24505 0.67 0.188893
Target:  5'- -uGUCGCCGagGCCGCGC-GcGGCAccgACa -3'
miRNA:   3'- ucCGGCGGCagCGGCGCGaC-CCGU---UG- -5'
26827 3' -64.4 NC_005809.1 + 24622 0.78 0.028845
Target:  5'- cGGCCucGCCaUCGCCGCGCUGcGCGACc -3'
miRNA:   3'- uCCGG--CGGcAGCGGCGCGACcCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 25020 0.68 0.164823
Target:  5'- cGGGuuGCCGUCcgagucaaaccacguGUCGCGCgauccgccguuaccaUcGGGCAGCa -3'
miRNA:   3'- -UCCggCGGCAG---------------CGGCGCG---------------A-CCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.