Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26827 | 3' | -64.4 | NC_005809.1 | + | 41849 | 0.75 | 0.048078 |
Target: 5'- cGGGCCGCUGcgcaaUCGCCGUcagcaggugGCUGGGCuugAGCg -3' miRNA: 3'- -UCCGGCGGC-----AGCGGCG---------CGACCCG---UUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 41748 | 0.65 | 0.242086 |
Target: 5'- aGGGCCGCCGcguuguuccagaagUUGaCCGCGCUuucGUAGCc -3' miRNA: 3'- -UCCGGCGGC--------------AGC-GGCGCGAcc-CGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 40547 | 0.66 | 0.231935 |
Target: 5'- gAGGCgGCCGguaUGCCgGUGCU-GGUGGCg -3' miRNA: 3'- -UCCGgCGGCa--GCGG-CGCGAcCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 39993 | 0.69 | 0.13752 |
Target: 5'- aGGGCgGCaagCGcgCGCaCGCGCUGGGCc-- -3' miRNA: 3'- -UCCGgCG---GCa-GCG-GCGCGACCCGuug -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 38881 | 0.66 | 0.209463 |
Target: 5'- gGGGCaGCgCGUCGCCGUGgUGGauucGCAc- -3' miRNA: 3'- -UCCGgCG-GCAGCGGCGCgACC----CGUug -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 38532 | 0.66 | 0.220455 |
Target: 5'- uGGCCuGCCGcUCGCCGCGgccGGCu-- -3' miRNA: 3'- uCCGG-CGGC-AGCGGCGCgacCCGuug -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 38079 | 0.71 | 0.096577 |
Target: 5'- gAGGCCGaaGUCGCCgagGCGCUGcucggugcgccaGGCGAg -3' miRNA: 3'- -UCCGGCggCAGCGG---CGCGAC------------CCGUUg -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 37486 | 0.69 | 0.133873 |
Target: 5'- cAGGCgGCCGUCGCUGCucacGCccuuGGCGAg -3' miRNA: 3'- -UCCGgCGGCAGCGGCG----CGac--CCGUUg -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 37330 | 0.66 | 0.214899 |
Target: 5'- cAGGUCgagGCCGUagGCCGCGagcacgUGGcGCAGCa -3' miRNA: 3'- -UCCGG---CGGCAg-CGGCGCg-----ACC-CGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 36905 | 0.66 | 0.237862 |
Target: 5'- -uGUCGCacaGaUCGCCcagcGCGCcGGGCAGCg -3' miRNA: 3'- ucCGGCGg--C-AGCGG----CGCGaCCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 36816 | 0.72 | 0.079597 |
Target: 5'- aAGGCCcuggcgcacucGCUGccCGgCGCGCUGGGCGAUc -3' miRNA: 3'- -UCCGG-----------CGGCa-GCgGCGCGACCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 35385 | 0.67 | 0.193862 |
Target: 5'- cGGGCCGauGUCGCCG-GCcuUGuGCAGCu -3' miRNA: 3'- -UCCGGCggCAGCGGCgCG--ACcCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 34851 | 0.68 | 0.174651 |
Target: 5'- cGGCCGCCGa-GCgUGCGCUGcaguucaucGGCAAg -3' miRNA: 3'- uCCGGCGGCagCG-GCGCGAC---------CCGUUg -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 34374 | 0.71 | 0.093956 |
Target: 5'- uGGCCGCCauGUCGCUGaCGaacGGGCAGg -3' miRNA: 3'- uCCGGCGG--CAGCGGC-GCga-CCCGUUg -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 33144 | 0.7 | 0.110747 |
Target: 5'- uAGGCCGCCGcgUCGCUGCGCgaccCGAUg -3' miRNA: 3'- -UCCGGCGGC--AGCGGCGCGacccGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 32433 | 0.69 | 0.139004 |
Target: 5'- uGGGCgGCCGggGCCucggcggcgaccgcaGCGacCUGGGCGGCg -3' miRNA: 3'- -UCCGgCGGCagCGG---------------CGC--GACCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 30273 | 0.67 | 0.188893 |
Target: 5'- uGGUCGCgcgaGUCGCCGgaaaaCGUcGGGUAGCg -3' miRNA: 3'- uCCGGCGg---CAGCGGC-----GCGaCCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 30028 | 0.7 | 0.104002 |
Target: 5'- cAGGCCGUCGUgCGCCGCGacgacaagcaccacCUGacuGGCAAg -3' miRNA: 3'- -UCCGGCGGCA-GCGGCGC--------------GAC---CCGUUg -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 29731 | 0.7 | 0.120161 |
Target: 5'- --aCgGCCG-CGCCcUGCUGGGCAACg -3' miRNA: 3'- uccGgCGGCaGCGGcGCGACCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 29540 | 0.66 | 0.209463 |
Target: 5'- uGGCCGCagaGgacacccaCGCCGUGCUcgGGGUAucGCg -3' miRNA: 3'- uCCGGCGg--Ca-------GCGGCGCGA--CCCGU--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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