Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26827 | 3' | -64.4 | NC_005809.1 | + | 4944 | 1.09 | 0.000087 |
Target: 5'- gAGGCCGCCGUCGCCGCGCUGGGCAACg -3' miRNA: 3'- -UCCGGCGGCAGCGGCGCGACCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 10548 | 0.7 | 0.107471 |
Target: 5'- cGGCCcguucggGCCGgUGCUGCGCgacuuccaGGGCGACg -3' miRNA: 3'- uCCGG-------CGGCaGCGGCGCGa-------CCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 27554 | 0.7 | 0.118221 |
Target: 5'- gAGGCCGCCGgcauccUCGCguggugcgugcgcggCGCGCUGGcauacCAGCg -3' miRNA: 3'- -UCCGGCGGC------AGCG---------------GCGCGACCc----GUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 41748 | 0.65 | 0.242086 |
Target: 5'- aGGGCCGCCGcguuguuccagaagUUGaCCGCGCUuucGUAGCc -3' miRNA: 3'- -UCCGGCGGC--------------AGC-GGCGCGAcc-CGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 41849 | 0.75 | 0.048078 |
Target: 5'- cGGGCCGCUGcgcaaUCGCCGUcagcaggugGCUGGGCuugAGCg -3' miRNA: 3'- -UCCGGCGGC-----AGCGGCG---------CGACCCG---UUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 6911 | 0.74 | 0.052321 |
Target: 5'- gGGGCCuacgaaaagGCCGUCGCCGa---GGGCAACg -3' miRNA: 3'- -UCCGG---------CGGCAGCGGCgcgaCCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 4447 | 0.73 | 0.071216 |
Target: 5'- aAGGCCgacaagucgGCCGUCGCCuucacGCGCaccGGCAACg -3' miRNA: 3'- -UCCGG---------CGGCAGCGG-----CGCGac-CCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 1371 | 0.72 | 0.077202 |
Target: 5'- uGGUgGCCGUCGCCcuggGCGCggcggugUGGGCGGg -3' miRNA: 3'- uCCGgCGGCAGCGG----CGCG-------ACCCGUUg -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 20362 | 0.71 | 0.096577 |
Target: 5'- cGGCCGCCGagcaaccCGCUacugGUGC-GGGCAACg -3' miRNA: 3'- uCCGGCGGCa------GCGG----CGCGaCCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 2155 | 0.7 | 0.107178 |
Target: 5'- uGGGCgCGCUacauggacgacaUCGUgGUGCUGGGCGACg -3' miRNA: 3'- -UCCG-GCGGc-----------AGCGgCGCGACCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 14974 | 0.71 | 0.103151 |
Target: 5'- gAGGCCgGCCagcagcagaUCGCCGCGCagacccugaaagccGGGCAACu -3' miRNA: 3'- -UCCGG-CGGc--------AGCGGCGCGa-------------CCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 38079 | 0.71 | 0.096577 |
Target: 5'- gAGGCCGaaGUCGCCgagGCGCUGcucggugcgccaGGCGAg -3' miRNA: 3'- -UCCGGCggCAGCGG---CGCGAC------------CCGUUg -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 25150 | 0.8 | 0.019893 |
Target: 5'- cGG-CGCCGggcgCGCUGCGCUGGGUGGCg -3' miRNA: 3'- uCCgGCGGCa---GCGGCGCGACCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 30028 | 0.7 | 0.104002 |
Target: 5'- cAGGCCGUCGUgCGCCGCGacgacaagcaccacCUGacuGGCAAg -3' miRNA: 3'- -UCCGGCGGCA-GCGGCGC--------------GAC---CCGUUg -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 24622 | 0.78 | 0.028845 |
Target: 5'- cGGCCucGCCaUCGCCGCGCUGcGCGACc -3' miRNA: 3'- uCCGG--CGGcAGCGGCGCGACcCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 13084 | 0.72 | 0.086493 |
Target: 5'- gAGGCCGUCGcCaCUGCGCUGcGCGGCc -3' miRNA: 3'- -UCCGGCGGCaGcGGCGCGACcCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 24225 | 0.7 | 0.104859 |
Target: 5'- aAGcGCgcaGCCGUCGagGCGCUGGGCcaGGCg -3' miRNA: 3'- -UC-CGg--CGGCAGCggCGCGACCCG--UUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 33144 | 0.7 | 0.110747 |
Target: 5'- uAGGCCGCCGcgUCGCUGCGCgaccCGAUg -3' miRNA: 3'- -UCCGGCGGC--AGCGGCGCGacccGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 12358 | 0.76 | 0.037264 |
Target: 5'- -cGCCGCCGUaGCCGgcaCGCUGGGcCAGCa -3' miRNA: 3'- ucCGGCGGCAgCGGC---GCGACCC-GUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 14348 | 0.73 | 0.065493 |
Target: 5'- uGGGCCGCa-UCGCCGacaGCaUGGuGCAGCa -3' miRNA: 3'- -UCCGGCGgcAGCGGCg--CG-ACC-CGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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