miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26827 3' -64.4 NC_005809.1 + 15688 0.68 0.169674
Target:  5'- cAGGCCGCUaUCGacgaagaaggcguCCGC-CUGGGCAu- -3'
miRNA:   3'- -UCCGGCGGcAGC-------------GGCGcGACCCGUug -5'
26827 3' -64.4 NC_005809.1 + 25669 0.68 0.165696
Target:  5'- -cGCCGCCGUgGuuGCcacugcCUGGGCcGCa -3'
miRNA:   3'- ucCGGCGGCAgCggCGc-----GACCCGuUG- -5'
26827 3' -64.4 NC_005809.1 + 9320 0.68 0.165696
Target:  5'- uGGCggCGCaCGUCGgCGCgGC-GGGCGGCg -3'
miRNA:   3'- uCCG--GCG-GCAGCgGCG-CGaCCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 25020 0.68 0.164823
Target:  5'- cGGGuuGCCGUCcgagucaaaccacguGUCGCGCgauccgccguuaccaUcGGGCAGCa -3'
miRNA:   3'- -UCCggCGGCAG---------------CGGCGCG---------------A-CCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 3749 0.68 0.157154
Target:  5'- uGGGCaCGUCGgUGCCGcCGCUGGacGUAGCc -3'
miRNA:   3'- -UCCG-GCGGCaGCGGC-GCGACC--CGUUG- -5'
26827 3' -64.4 NC_005809.1 + 28822 0.68 0.157154
Target:  5'- -aGCgCGCCGUCGUCGgGUUGcGGCcgGACu -3'
miRNA:   3'- ucCG-GCGGCAGCGGCgCGAC-CCG--UUG- -5'
26827 3' -64.4 NC_005809.1 + 6242 0.68 0.153035
Target:  5'- aGGGCCugcacGCCGguaacggUGCgguugaucugCGCGCUGGGCAGg -3'
miRNA:   3'- -UCCGG-----CGGCa------GCG----------GCGCGACCCGUUg -5'
26827 3' -64.4 NC_005809.1 + 16291 0.68 0.149013
Target:  5'- aAGGCUacccgGUCGUCGUCGCGCacGGGaAGCg -3'
miRNA:   3'- -UCCGG-----CGGCAGCGGCGCGa-CCCgUUG- -5'
26827 3' -64.4 NC_005809.1 + 12741 0.69 0.145088
Target:  5'- cGGGCC-UCGacacgCGCCuGCGCaugaUGGGCGACg -3'
miRNA:   3'- -UCCGGcGGCa----GCGG-CGCG----ACCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 28252 0.69 0.145088
Target:  5'- aAGG-CGCCGcaccUGCUGgGCgUGGGCAACg -3'
miRNA:   3'- -UCCgGCGGCa---GCGGCgCG-ACCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 4354 0.69 0.141258
Target:  5'- uGGCCGUugCGUUGCCgguGCGCgugaaGGCGACg -3'
miRNA:   3'- uCCGGCG--GCAGCGG---CGCGac---CCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 677 0.69 0.141258
Target:  5'- cAGGCCGCCuacggcggCGCCG-GCcGGGCcGCc -3'
miRNA:   3'- -UCCGGCGGca------GCGGCgCGaCCCGuUG- -5'
26827 3' -64.4 NC_005809.1 + 20278 0.69 0.140127
Target:  5'- uGGCCGUCGUUGcCCGCaccaguagcggguuGCUcGGCGGCc -3'
miRNA:   3'- uCCGGCGGCAGC-GGCG--------------CGAcCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 32433 0.69 0.139004
Target:  5'- uGGGCgGCCGggGCCucggcggcgaccgcaGCGacCUGGGCGGCg -3'
miRNA:   3'- -UCCGgCGGCagCGG---------------CGC--GACCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 3548 0.69 0.13752
Target:  5'- aGGaGCCGCCGaauagCGCagcagCGgGCUGGGCGuACa -3'
miRNA:   3'- -UC-CGGCGGCa----GCG-----GCgCGACCCGU-UG- -5'
26827 3' -64.4 NC_005809.1 + 39993 0.69 0.13752
Target:  5'- aGGGCgGCaagCGcgCGCaCGCGCUGGGCc-- -3'
miRNA:   3'- -UCCGgCG---GCa-GCG-GCGCGACCCGuug -5'
26827 3' -64.4 NC_005809.1 + 11651 0.69 0.133873
Target:  5'- cGGCCaGCCG--GCgGCcCUGGGCGGCa -3'
miRNA:   3'- uCCGG-CGGCagCGgCGcGACCCGUUG- -5'
26827 3' -64.4 NC_005809.1 + 37486 0.69 0.133873
Target:  5'- cAGGCgGCCGUCGCUGCucacGCccuuGGCGAg -3'
miRNA:   3'- -UCCGgCGGCAGCGGCG----CGac--CCGUUg -5'
26827 3' -64.4 NC_005809.1 + 28926 0.69 0.130316
Target:  5'- gAGGaCGUgG-CGCgGCGCUGGGaCAGCu -3'
miRNA:   3'- -UCCgGCGgCaGCGgCGCGACCC-GUUG- -5'
26827 3' -64.4 NC_005809.1 + 1522 0.69 0.129965
Target:  5'- gAGGCCGCCGaccgCGCCGUcaagaagguguuuGCcaucuUGGGCGu- -3'
miRNA:   3'- -UCCGGCGGCa---GCGGCG-------------CG-----ACCCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.