miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26827 5' -50.6 NC_005809.1 + 3455 0.66 0.914423
Target:  5'- aGGCAACCgAUGGaaccCAUCGaggaagcgacaaaguGCUACGa -3'
miRNA:   3'- cCCGUUGGaUACCa---GUAGC---------------UGAUGCc -5'
26827 5' -50.6 NC_005809.1 + 5866 0.66 0.911786
Target:  5'- aGGGCGGCUUcuaccccaaGGUCAUCGAgcACGc -3'
miRNA:   3'- -CCCGUUGGAua-------CCAGUAGCUgaUGCc -5'
26827 5' -50.6 NC_005809.1 + 35447 0.66 0.904988
Target:  5'- gGGGCGACgCUG-GGcuugcCAUCGgACUGCGu -3'
miRNA:   3'- -CCCGUUG-GAUaCCa----GUAGC-UGAUGCc -5'
26827 5' -50.6 NC_005809.1 + 4894 0.66 0.902891
Target:  5'- cGGCGGCCUcguuuucggccacgGUGGaaaCGUCGGCaGCGa -3'
miRNA:   3'- cCCGUUGGA--------------UACCa--GUAGCUGaUGCc -5'
26827 5' -50.6 NC_005809.1 + 32433 0.66 0.89052
Target:  5'- uGGGCGGCCgg-GGcC-UCGGCgGCGa -3'
miRNA:   3'- -CCCGUUGGauaCCaGuAGCUGaUGCc -5'
26827 5' -50.6 NC_005809.1 + 8125 0.67 0.874922
Target:  5'- -cGCGGCCggcguUGGUUGUgGGCgUGCGGg -3'
miRNA:   3'- ccCGUUGGau---ACCAGUAgCUG-AUGCC- -5'
26827 5' -50.6 NC_005809.1 + 23429 0.67 0.874922
Target:  5'- cGGGCAcGCCaccGUGuUCAUCGGCgGCGa -3'
miRNA:   3'- -CCCGU-UGGa--UACcAGUAGCUGaUGCc -5'
26827 5' -50.6 NC_005809.1 + 40115 0.67 0.858243
Target:  5'- uGGGCGugCc--GGUCAguUCGAUgaaGCGGu -3'
miRNA:   3'- -CCCGUugGauaCCAGU--AGCUGa--UGCC- -5'
26827 5' -50.6 NC_005809.1 + 20330 0.67 0.858242
Target:  5'- cGGGCuGGCCUucaGUGGUCGUugCGGCUucCGu -3'
miRNA:   3'- -CCCG-UUGGA---UACCAGUA--GCUGAu-GCc -5'
26827 5' -50.6 NC_005809.1 + 34837 0.68 0.831338
Target:  5'- uGGGCAugUcccacucgcugaUAUGGUCGaggcgCGGCUGCa- -3'
miRNA:   3'- -CCCGUugG------------AUACCAGUa----GCUGAUGcc -5'
26827 5' -50.6 NC_005809.1 + 25633 0.68 0.821905
Target:  5'- cGGCGuacaacuccgacGCCgaca-UCAUCGGCUACGGg -3'
miRNA:   3'- cCCGU------------UGGauaccAGUAGCUGAUGCC- -5'
26827 5' -50.6 NC_005809.1 + 4531 0.68 0.809323
Target:  5'- uGGCGugCUGggcGGUCGugccgccgcggaacUgGACUGCGGu -3'
miRNA:   3'- cCCGUugGAUa--CCAGU--------------AgCUGAUGCC- -5'
26827 5' -50.6 NC_005809.1 + 22768 0.69 0.761201
Target:  5'- aGGGUgagGGCCgauUGGUCAaCGccCUGCGGg -3'
miRNA:   3'- -CCCG---UUGGau-ACCAGUaGCu-GAUGCC- -5'
26827 5' -50.6 NC_005809.1 + 28141 0.7 0.695379
Target:  5'- cGGGCGgcagcagcuuGCCgGUGGUCAgaUCGACcACGc -3'
miRNA:   3'- -CCCGU----------UGGaUACCAGU--AGCUGaUGCc -5'
26827 5' -50.6 NC_005809.1 + 32946 0.71 0.650006
Target:  5'- aGGGCGACCac-GGcugCGUCGAUUACuGGc -3'
miRNA:   3'- -CCCGUUGGauaCCa--GUAGCUGAUG-CC- -5'
26827 5' -50.6 NC_005809.1 + 9312 0.74 0.493232
Target:  5'- cGGCGACCUGgcGGcgcaCGUCGGCgcgGCGGg -3'
miRNA:   3'- cCCGUUGGAUa-CCa---GUAGCUGa--UGCC- -5'
26827 5' -50.6 NC_005809.1 + 38534 0.74 0.47206
Target:  5'- uGGGCGGCgCUGaauucgucgcGGUCGUCGGCUuCGGu -3'
miRNA:   3'- -CCCGUUG-GAUa---------CCAGUAGCUGAuGCC- -5'
26827 5' -50.6 NC_005809.1 + 4909 1.13 0.001364
Target:  5'- cGGGCAACCUAUGGUCAUCGACUACGGc -3'
miRNA:   3'- -CCCGUUGGAUACCAGUAGCUGAUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.