Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26828 | 5' | -50.4 | NC_005809.1 | + | 39114 | 0.7 | 0.704541 |
Target: 5'- --cGCGAACAUCGggGCGcGCGG-CGu -3' miRNA: 3'- guuCGCUUGUAGUuaCGU-CGCCaGCc -5' |
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26828 | 5' | -50.4 | NC_005809.1 | + | 39670 | 0.7 | 0.704541 |
Target: 5'- --cGCGAACAUCGggGCGcGCGG-CGu -3' miRNA: 3'- guuCGCUUGUAGUuaCGU-CGCCaGCc -5' |
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26828 | 5' | -50.4 | NC_005809.1 | + | 34516 | 0.7 | 0.67022 |
Target: 5'- -cGGUGAACugaugGUCGA-GCAGCGGUUGa -3' miRNA: 3'- guUCGCUUG-----UAGUUaCGUCGCCAGCc -5' |
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26828 | 5' | -50.4 | NC_005809.1 | + | 37307 | 0.72 | 0.577816 |
Target: 5'- --cGCGAACAUCAAcaCGGUGGcCGGu -3' miRNA: 3'- guuCGCUUGUAGUUacGUCGCCaGCC- -5' |
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26828 | 5' | -50.4 | NC_005809.1 | + | 36984 | 0.73 | 0.521311 |
Target: 5'- gAGGCGGACAUCGAcaCGGUGG-CGGc -3' miRNA: 3'- gUUCGCUUGUAGUUacGUCGCCaGCC- -5' |
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26828 | 5' | -50.4 | NC_005809.1 | + | 9323 | 0.73 | 0.510254 |
Target: 5'- -cGGCGcACGUCGGcGCGGCGGgCGGc -3' miRNA: 3'- guUCGCuUGUAGUUaCGUCGCCaGCC- -5' |
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26828 | 5' | -50.4 | NC_005809.1 | + | 24699 | 0.76 | 0.377542 |
Target: 5'- cCAGGCuGucCAUCGGUGcCAGuCGGUCGGg -3' miRNA: 3'- -GUUCG-CuuGUAGUUAC-GUC-GCCAGCC- -5' |
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26828 | 5' | -50.4 | NC_005809.1 | + | 21806 | 0.76 | 0.350367 |
Target: 5'- -uGGCGGACAccggCAGuUGCAGCGG-CGGg -3' miRNA: 3'- guUCGCUUGUa---GUU-ACGUCGCCaGCC- -5' |
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26828 | 5' | -50.4 | NC_005809.1 | + | 39802 | 0.78 | 0.284875 |
Target: 5'- --uGCGcAACGUCGAggugucgGCAGUGGUCGGc -3' miRNA: 3'- guuCGC-UUGUAGUUa------CGUCGCCAGCC- -5' |
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26828 | 5' | -50.4 | NC_005809.1 | + | 37510 | 0.82 | 0.16358 |
Target: 5'- gCAAuGcCGAcaACAUCAAUGCAGCGGUCGc -3' miRNA: 3'- -GUU-C-GCU--UGUAGUUACGUCGCCAGCc -5' |
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26828 | 5' | -50.4 | NC_005809.1 | + | 37544 | 0.83 | 0.145712 |
Target: 5'- cCAGGCGAAUAUCAAcGCAGUaGUCGGu -3' miRNA: 3'- -GUUCGCUUGUAGUUaCGUCGcCAGCC- -5' |
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26828 | 5' | -50.4 | NC_005809.1 | + | 37484 | 1.1 | 0.001916 |
Target: 5'- cCAAGCGAACAUCAAUGCAGCGGUCGGc -3' miRNA: 3'- -GUUCGCUUGUAGUUACGUCGCCAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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