Results 41 - 60 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26829 | 5' | -53 | NC_005809.1 | + | 18270 | 0.77 | 0.235182 |
Target: 5'- cGCCGAgaacuUGCCGGcCGUCAGCggGCCgGUGGCg -3' miRNA: 3'- -CGGUU-----GCGGUU-GCAGUUG--UGG-CACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 28864 | 0.77 | 0.222865 |
Target: 5'- cCCAGCGCCGcgccACGUCcuCGCUGcUGGCg -3' miRNA: 3'- cGGUUGCGGU----UGCAGuuGUGGC-ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 14828 | 0.78 | 0.194459 |
Target: 5'- uGCCuuCGCCcAgGUCGAUGCCGuUGGCg -3' miRNA: 3'- -CGGuuGCGGuUgCAGUUGUGGC-ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 4255 | 0.79 | 0.169272 |
Target: 5'- aGUCggUGCCGGcCGUCAGCGCCGgcaUGGUg -3' miRNA: 3'- -CGGuuGCGGUU-GCAGUUGUGGC---ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 23096 | 0.81 | 0.127509 |
Target: 5'- cCCGACGCCAACGgCGGCGCCcacGGCg -3' miRNA: 3'- cGGUUGCGGUUGCaGUUGUGGca-CCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 41843 | 0.74 | 0.346262 |
Target: 5'- gGUCAucCGCCAgGCGcUCGACuugGCCGUGGCc -3' miRNA: 3'- -CGGUu-GCGGU-UGC-AGUUG---UGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 6676 | 0.74 | 0.346262 |
Target: 5'- cGCC-ACGCCGAUGuUCAGgGCCGUGu- -3' miRNA: 3'- -CGGuUGCGGUUGC-AGUUgUGGCACcg -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 32090 | 0.71 | 0.490249 |
Target: 5'- cGCCAACacgGCC-GCGuugcUCAACGCCcUGGCc -3' miRNA: 3'- -CGGUUG---CGGuUGC----AGUUGUGGcACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 3795 | 0.71 | 0.479751 |
Target: 5'- aGCCAGCGCCuggaauuCGUUguaguugggcaGGCgcuuGCCGUGGUg -3' miRNA: 3'- -CGGUUGCGGuu-----GCAG-----------UUG----UGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 29618 | 0.72 | 0.459094 |
Target: 5'- uCCAGCGCCgGGCGcUUGugGCCG-GGCu -3' miRNA: 3'- cGGUUGCGG-UUGC-AGUugUGGCaCCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 32590 | 0.72 | 0.45299 |
Target: 5'- cGCCGACGCUGugaccaagcuggcccGCGUCAagggccgcgACGCCGcGGUc -3' miRNA: 3'- -CGGUUGCGGU---------------UGCAGU---------UGUGGCaCCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 23354 | 0.72 | 0.438921 |
Target: 5'- gGCCucgcCGCCGAUG--AACACgGUGGCg -3' miRNA: 3'- -CGGuu--GCGGUUGCagUUGUGgCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 18779 | 0.72 | 0.429026 |
Target: 5'- uCCAuCGUCAGCGUCGAgGCCGccaccuuguUGGUg -3' miRNA: 3'- cGGUuGCGGUUGCAGUUgUGGC---------ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37144 | 0.73 | 0.409637 |
Target: 5'- cGCCcACGCCGcCaUCcGCGCCGUGGa -3' miRNA: 3'- -CGGuUGCGGUuGcAGuUGUGGCACCg -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 23460 | 0.73 | 0.408682 |
Target: 5'- cGCgCGuacACGCCGGCGUgGaacagguGCGCCGUGGg -3' miRNA: 3'- -CG-GU---UGCGGUUGCAgU-------UGUGGCACCg -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 25662 | 0.73 | 0.400149 |
Target: 5'- uGCCGGCGUCAuguACGUCAucaGCCGgcggauuucGGCa -3' miRNA: 3'- -CGGUUGCGGU---UGCAGUug-UGGCa--------CCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 35222 | 0.73 | 0.400149 |
Target: 5'- -aCGACGCCGAgGUCGAgGCCGcgcucaaGGCc -3' miRNA: 3'- cgGUUGCGGUUgCAGUUgUGGCa------CCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 18389 | 0.73 | 0.372543 |
Target: 5'- uGCCGaugGCGCCGguggcggccACGUCGGCGaagGUGGCg -3' miRNA: 3'- -CGGU---UGCGGU---------UGCAGUUGUgg-CACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 2206 | 0.73 | 0.363634 |
Target: 5'- uGCCGACGCCcuCGUCGgguagcaccacGCGCagcaggcggcgCGUGGCc -3' miRNA: 3'- -CGGUUGCGGuuGCAGU-----------UGUG-----------GCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37597 | 0.74 | 0.349688 |
Target: 5'- cGCCAACGUCAugGaacugaccagCAgcgcgauacgcggcuGCAUCGUGGCg -3' miRNA: 3'- -CGGUUGCGGUugCa---------GU---------------UGUGGCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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